HsaEX0020691 @ hg38
Exon Skipping
Gene
ENSG00000101134 | DOK5
Description
docking protein 5 [Source:HGNC Symbol;Acc:HGNC:16173]
Coordinates
chr20:54554933-54643578:+
Coord C1 exon
chr20:54554933-54555040
Coord A exon
chr20:54591616-54591805
Coord C2 exon
chr20:54643458-54643578
Length
190 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTGTTTTTCTCCCAGAGA
3' ss Score
9.78
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATTTATCAGCGATGCTGGTTAGTATTCAAGAAAGCTTCAAGCAAAGGTCCAAAAAGACTGGAGAAATTTTCTGATGAACGTGCTGCATATTTCAGGTGTTATCATAAG
Seq A exon
AGAGATTCAATGTGTATTTGATGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAGATTACATATGAGTATATCTGTCTTTGGGACGTCCAGAATCCCAGAGTCAAACTCATCTCTTGGCCGCTAAGCGCCCTGCGGCGGTATGGACGTGATACTACGTGGTTCACTTTTGAGGCAGGGAG
Seq C2 exon
CTCCAGATGAAGATGAGTGAGCGGGCCGCCTCGCTGAGCACCATGGTGCCCCTGCCTCGCAGCGCCTACTGGCAGCACATCACACGGCAGCACAGCACGGGACAGCTCTACCGCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101134_MULTIEX1-3/5=C1-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(33.3=100)
A:
PF0217412=IRS=FE(64.3=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGATGCTGGTTAGTATTCA
R:
TAGAGCTGTCCCGTGCTGTG
Band lengths:
211-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development