DreEX0028059 @ danRer10
Exon Skipping
Gene
ENSDARG00000063032 | dok6
Description
docking protein 6 [Source:ZFIN;Acc:ZDB-GENE-070410-50]
Coordinates
chr24:14909561-14917465:+
Coord C1 exon
chr24:14909561-14909680
Coord A exon
chr24:14916875-14917064
Coord C2 exon
chr24:14917327-14917465
Length
190 bp
Sequences
Splice sites
3' ss Seq
TCATTTACTCTTCTTTATAGAGA
3' ss Score
7.61
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
AGCTGGAGGCTGAGGAGTGGTGGAAGTTATTGTGTTTGGAGTGTCTGGGCAGCAGACTTAATGACATCAGCCTGGGAGAACCGGACTTGTTAGCAGCAGGGGTGCAGAGGGAACAGAACG
Seq A exon
AGAGATTTAACGTATACTTGATGCCGACCCCAAACCTGGACATCTATGGAGAGTGTACGATGCAAATCACTCACGAGAACATCTACCTTTGGGACATTCATAATGCCAGAGTCAAGCTGGTCATGTGGCCACTCAACTCCTTAAGGAGATACGGCAGAGACTCCACCTGGTTCACTTTCGAGTCCGGGAG
Seq C2 exon
GATGTGTGATACCGGGGAGGGTTTGTTCACGTTTCAGACCAGAGAAGGTGAGATGATCTATCAGAGAGTTCACTCTGCTACGCTGTCGATCGCAGAGCAACATGAACGCATGATGATGGAGATGGAGAAAAGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063032-'5-9,'5-7,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(13.5=34.1),PF0217412=IRS=PU(2.0=4.9)
A:
PF0217412=IRS=FE(64.3=100)
C2:
PF0217412=IRS=PD(32.7=68.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTGAGGAGTGGTGGAAG
R:
CTCCATCTCCATCATCATGCGT
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]