MmuEX0015494 @ mm10
Exon Skipping
Gene
ENSMUSG00000027560 | Dok5
Description
docking protein 5 [Source:MGI Symbol;Acc:MGI:1924079]
Coordinates
chr2:170830069-170841555:+
Coord C1 exon
chr2:170830069-170830188
Coord A exon
chr2:170832882-170833071
Coord C2 exon
chr2:170841420-170841555
Length
190 bp
Sequences
Splice sites
3' ss Seq
ACGTTTTGTTTTTCTCCCAGAGA
3' ss Score
8.99
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATCTTGAGGCAGACGAATGGTGCAAAGTTCTCCAGATGGAGTGTGTGGGGACCAGAATCAATGACATCAGCCTCGGAGAGCCTGATTTATTGGCTACCGGGGTGGAACGCGAGCAGAGCG
Seq A exon
AGAGGTTCAATGTGTATTTGATGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAGATTACATATGAGTACATCTGTCTTTGGGACGTCCAGAATCCCAGAGTTAAACTCATCTCTTGGCCGCTAAGTGCCCTGCGGCGTTATGGACGAGACACCACGTGGTTCACTTTTGAGGCAGGGAG
Seq C2 exon
GATGTGTGAGACTGGCGAAGGGTTATTTATTTTTCAAACACGAGACGGAGAGGCCATCTACCAGAAGGTCCACTCTGCTGCCTTGGCCATAGCTGAGCAGCATGAACGGCTGCTGCAGAGCGTGAAAAATTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027560_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.3=36.6),PF0217412=IRS=PU(2.0=4.9)
A:
PF0217412=IRS=FE(64.3=100)
C2:
PF0217412=IRS=PD(32.7=69.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAGACGAATGGTGCAAA
R:
GGAATTTTTCACGCTCTGCAGC
Band lengths:
248-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types