HsaEX0020691 @ hg19
Exon Skipping
Gene
ENSG00000101134 | DOK5
Description
docking protein 5 [Source:HGNC Symbol;Acc:16173]
Coordinates
chr20:53205226-53227062:+
Coord C1 exon
chr20:53205226-53205345
Coord A exon
chr20:53208155-53208344
Coord C2 exon
chr20:53226927-53227062
Length
190 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTGTTTTTCTCCCAGAGA
3' ss Score
9.78
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATCTTGAGGCTGATGAGTGGTGCAAAGTACTCCAGATGGAGTGTGTAGGAACACGGATCAATGACATCAGCCTTGGAGAGCCTGACTTACTGGCCACTGGGGTTGAGAGAGAACAGAGTG
Seq A exon
AGAGATTCAATGTGTATTTGATGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAGATTACATATGAGTATATCTGTCTTTGGGACGTCCAGAATCCCAGAGTCAAACTCATCTCTTGGCCGCTAAGCGCCCTGCGGCGGTATGGACGTGATACTACGTGGTTCACTTTTGAGGCAGGGAG
Seq C2 exon
GATGTGTGAGACTGGTGAAGGGCTGTTTATCTTTCAGACCCGAGACGGGGAGGCCATCTATCAGAAAGTCCACTCTGCTGCCTTGGCCATAGCCGAGCAGCACGAGCGCTTGCTACAGAGTGTGAAAAACTCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101134-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.3=36.6),PF0217412=IRS=PU(2.0=4.9)
A:
PF0217412=IRS=FE(64.3=100)
C2:
PF0217412=IRS=PD(32.7=69.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGGCTGATGAGTGGTGC
R:
TTCACACTCTGTAGCAAGCGC
Band lengths:
244-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)