GgaEX0011066 @ galGal4
Exon Skipping
Gene
ENSGALG00000007786 | DOK5
Description
docking protein 5 [Source:HGNC Symbol;Acc:HGNC:16173]
Coordinates
chr20:12606114-12608186:-
Coord C1 exon
chr20:12608067-12608186
Coord A exon
chr20:12607126-12607315
Coord C2 exon
chr20:12606114-12606249
Length
190 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTGTTTTTCTCCCAGAGA
3' ss Score
9.78
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AACTTGAGGCAGATGAGTGGTGCAAGGTATTGCAGATGGAGTGTCTTGGGACACGAATTAATGACATTAGCCTTGGAGAGCCTGACTTGTTGGCATCGGGAGTGGAGAGGGAGCAGAATG
Seq A exon
AGAGATTCAATGTGTATTTGATGCCATCCCCTAACTTAGATGTGCATGGGGAATGTACCTTGCAGATAACATTTGAGAATATCTGTCTTTGGGACATCCAGAATCCCAGAGTCAAACTCATCTCTTGGCCATTAAGTGCCCTCCGACGCTACGGGCGGGACCCTTCTTGGTTCACCTTTGAAGCAGGGAG
Seq C2 exon
GATGTGCGACACAGGAGAAGGACTGTTCATCTTTCAGACACGAGATGGGGAAGCAATCTATCAGAAGGTTCACTCGGCTGCTCTGGCCATAGCAGAACAACACGAGCGCCTGTTGCAGAGCGTGAAAAATTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007786_MULTIEX1-7/9=6-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(13.5=34.1),PF0217412=IRS=PU(2.0=4.9)
A:
PF0217412=IRS=FE(64.3=100)
C2:
PF0217412=IRS=PD(32.7=69.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAGATGAGTGGTGCAAG
R:
TTTTTCACGCTCTGCAACAGG
Band lengths:
244-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]