BtaEX0011900 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047975 | DOK5
Description
Bos taurus docking protein 5 (DOK5), mRNA. [Source:RefSeq mRNA;Acc:NM_001075939]
Coordinates
chr13:82696338-82764276:+
Coord C1 exon
chr13:82696338-82696457
Coord A exon
chr13:82699411-82699600
Coord C2 exon
chr13:82764141-82764276
Length
190 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTGTTTTTCTCCCAGAGA
3' ss Score
9.78
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATCTTGAGGCTGACGAGTGGTGCAAAGTCCTCCAGATGGAGTGTGTGGGGACGCGGGTCAATGACATCAGCCTCGGAGAGCCTGACTTACTGGCCACCGGAGTTGAGAGAGAGCAGAGTG
Seq A exon
AGAGATTCAATGTGTATTTGCTGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAGATCACATGTGAGCACATCTGTCTTTGGGACGTCCAGAATCCCAGAGTCAAACTCATCTCTTGGCCGCTAAGCGCGCTGCGGCGGTATGGGCGAGATGCTGCCTGGTTCACTTTTGAGGCAGGGAG
Seq C2 exon
GATGTGTGAGACTGGTGAAGGGCTGTTTGTCTTTCAAACGCGAGATGGGGAGGCCATCTACCAGAAGGTCCACTCGGCTGCCCTGGCCATAGCGGAGCAGCACGAGCGCCTGCTGCAGAGCGTGAAGAGCTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047975_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.8=36.6),PF0217412=IRS=PU(3.1=4.9)
A:
PF0217412=IRS=FE(95.4=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGTGCAAAGTCCTCCAG
R:
CATGGAGCTCTTCACGCTCTG
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development