RnoEX0030020 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38026461-38030179:-
Coord C1 exon
chr9:38030079-38030179
Coord A exon
chr9:38028788-38029457
Coord C2 exon
chr9:38026461-38026589
Length
670 bp
Sequences
Splice sites
3' ss Seq
CTTAAACATTCCTATTGCAGATA
3' ss Score
8.53
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AGACAATGAGGGAGCAAGCCCTGCGTCCTTCCAGACCGCCTGTGCCGTATCAGGATGACAGACTTGAAAGGGAGTTGGTGAAGCTTTTGACACCCTTAGAG
Seq A exon
ATAGCAAAGAGCAAACAGTGCGGCGTGCATACAGAAGTCATGGCCTTAACACAAGAGAAGAAGCTGGGTTTCAATGCTGGTGGATGGATGCTGGAAGGGTCCAGAACGTCTGGTGGACTCAAGGGAGATTTCCTTAAGAAAGGCGTAGAGTCAGAGACTCCCCAGAACCCTGACCTTAACCAAGCATGCGCTGTTAGGGATGATGAGTTTCAGTTCCAAGGGCTCAGGCACATGGTGACTGGCAGGCAGCTGGTCGAGGCAAAGCTTCTGGATGTGAGAACAGTTGAGCAGCTGCGGCTTGGTCTGAAGACTGTTGAAGAAGTTCAGAGAAGTCTTAGCAAGTTTCTGACCAAGGCCACCTCGATCGCAGGACTGTATCTAGAATCTTCCAAAGAAAAGATGTCATTCTCTTCGGCCGCCCAGAAAATCATAATAGACAAAATGATGGCTCTAGCCCTTTTGGAGGCTCAGGCTGCAACAGGTTTTATTATCGATCCCATCTCTGGTCAGACTTACTGTGTCGAAGACGCAGTCCTTCGAGGTGTCGTCGACCCCGAGTTCAGGAATAGGCTCCTAGAGGCAGAGAAGGCAGTTCTGGGATATTCCCATACTAATACAACGCTGTCAGTGTTCCAGGCCATGGAAAATAGAATGCTGGACAGGAAGAAAG
Seq C2 exon
AAGTCACTGGATGAAGAGAAGAAACAGCATGTTGAAAAGGCTAAAGAATTGCAGAAATGGGTATCAAATATCAGCGAGACACTGGGAGATGGGGAGAGAGCTGGGAAACCTCACTTCTCTAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'51-45,'51-44,52-45
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.071 C2=0.537
Domain overlap (PFAM):
C1:
NA
A:
PF0068115=Plectin=WD(100=19.2),PF0068115=Plectin=WD(100=20.1)
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000044452fB4504
Main Skipping Isoform:
ENSRNOT00000044452fB4509
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAATGAGGGAGCAAGCC
R:
CTGTTGCTTAGAGAAGTGAGGT
Band lengths:
230-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]