GgaEX1021121 @ galGal4
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86420003-86430843:+
Coord C1 exon
chr3:86420003-86420101
Coord A exon
chr3:86427440-86427962
Coord C2 exon
chr3:86430709-86430843
Length
523 bp
Sequences
Splice sites
3' ss Seq
AAAAAAATTCCTATTTACAGATA
3' ss Score
6.79
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
TTCATGGATTTACGAACTCGTTATACTGCCTTAGTGACTTTGATGACACAGTACATCAAGTTTGCAGGTGACTCTCTGAAAAGGCTGGAGGAGGAAGAG
Seq A exon
ATAGCGAAGAACAAGCAGTATGACATGCATGTTGAAGTTACAACTTTAAAACAAGAAAATGGCAAGACTTTTGGTAATGAAGAGAGAATGTTTGAGGGATACAAAACATCTGAAGGGTTTAGGAGAGAAGACTTTGCAAAGATGAATTCTTTCTTAGGAGAAGAGATTTTGAGAACTGTTGATGATGCTACTCAGTTGGAATGTATTCCAGAAGAATACGATGATATTAAATTTCAAGGTCTTCGACATGATGTAACTGCCAGACAATTGATTGAAGTTAAACTTCTAGACAGGCTTACTGTTGAGCATCTCCATTCAGGGCAGAAAACTATTGAGGAGGTTCAGAAAAGTCTTGAAAAATTTTTAACTAAACCTACTGCTATAGCTGGAGTGTACCTTGAATCCAGCAAAGAAATACTGTCCTTTTCTTTAGCAACAAAGAGAAGAATCATAGGGAAGGCATTGGCATTAGCATTCTTAGAGGCTCAAGCTGCTACTGGTTTCATCATTGACCCTACAACAG
Seq C2 exon
AGGTCAATGGAAGAAGAAAAAAAAGAACATGTTGAGAAGGCTGGGGATTTACTGAAATGGGTGTCAAACCTCAGCAAGACACTCAGCAAAGAAGGAGGAGAAAAGGCTGAAAAGACAGATTTGCCTAAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289_MULTIEX1-5/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.040 C2=0.601
Domain overlap (PFAM):
C1:
NO
A:
PF0068115=Plectin=PU(85.7=10.3)
C2:
PF0068115=Plectin=PD(9.5=16.7)
Main Inclusion Isoform:
ENSGALT00000026264fB6989
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACTCGTTATACTGCCTTAGTGA
R:
TAGGCAAATCTGTCTTTTCAGCCT
Band lengths:
214-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]