GgaEX1021117 @ galGal4
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86420003-86430843:+
Coord C1 exon
chr3:86420003-86420101
Coord A exon
chr3:86421671-86422642
Coord C2 exon
chr3:86430709-86430843
Length
972 bp
Sequences
Splice sites
3' ss Seq
TCATGTGCTGTCATGCTCAGAAC
3' ss Score
7.05
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
TTCATGGATTTACGAACTCGTTATACTGCCTTAGTGACTTTGATGACACAGTACATCAAGTTTGCAGGTGACTCTCTGAAAAGGCTGGAGGAGGAAGAG
Seq A exon
AACTTAACAGATCAGAGTGAACTCCAGCAACCTGTGAAGTCAGCTGAAGTCTTTGAATGTTTGGGATGTAATGAAGCGGTTGAATTCCCAGAGGAAAGTGCACCTAATGAAAGCACAATGGATGTGGAATATATGCAAAAAGATAACTCTCCCAGGAAACCTAAACACACAGAAAGTACACTGGAAATTCACAGAAGAAAATTAGACAGATCTGATGAAAACAAAACTGACAGAACTTTAAAACAATTTTTAAGTGTCAGTGGTCAAGAAAGTAGCATTAGTGGCGACAGAGAGTATAAGCTGTGTTCAGAGCAAGACAGTGTAATGGTGTTTGGTGATCACAGTAAAGGAGATTGTAGAAAAGATTGTTTTCTTTCAGCTGAGGCCTCTGTGAGTGCAGACAGTAATCCTGGTAAAAGGTTAAGTCAGCAGATTGTTAGTGGAGAGAGACTGAAAATAGAGGGAGAAACAAATAAGTTATCTGAAATGGATGAAGTACATGAAAATAAAGAAAAAAAATGTTCAAGAAAAGCACAGAGTGATCCAAATTTAGATAGAGAATTGTTGGGAAATGCACAGGATTTAAATACACCATCAGAAATTATTTCTGGAGGAGAGAATATTTTTCCAGAACATAAATTAGGTAAAAAGCTTTTGAGTCGGGAAGAGACAGTAAATGAGAAGAAAATATCACAGGGTAAAATTTATGGTTTGGACAGCATAAATATAAAAAGGAAGAAACTGAGTGGAGAGAATGAGTTAGCACAGGATCAGAAATACAAAGACTTATGGCTAGTTGCAGAAATGGAAAGTAAAGATACAGGTCAAAGCACAAACATACCTGGAAAAAACACTGAACTCCAAAACACATTCTGTGAAAACACAGTAAGCAAAATCTCCCTTGAAAAAAAAGAGAAGCCAAAGAAAAAAGACAGTGATAATGAAGATAAATGGAGCCCAACTATAATTAAG
Seq C2 exon
AGGTCAATGGAAGAAGAAAAAAAAGAACATGTTGAGAAGGCTGGGGATTTACTGAAATGGGTGTCAAACCTCAGCAAGACACTCAGCAAAGAAGGAGGAGAAAAGGCTGAAAAGACAGATTTGCCTAAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289_MULTIEX1-1/5=C1-C2
Average complexity
ME(1-4[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.664 C2=0.601
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068115=Plectin=PD(9.5=16.7)
Main Inclusion Isoform:
ENSGALT00000026264fB6985
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACTCGTTATACTGCCTTAGTGA
R:
TAGGCAAATCTGTCTTTTCAGCCT
Band lengths:
214-1186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]