RnoEX0031269 @ rn6
Exon Skipping
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4590413-4591638:+
Coord C1 exon
chr20:4590413-4590528
Coord A exon
chr20:4590629-4590715
Coord C2 exon
chr20:4591560-4591638
Length
87 bp
Sequences
Splice sites
3' ss Seq
GACTCCCTCTCCACCTCCAGGGT
3' ss Score
9.75
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GACGGGCGGCTGCTCCAGGAGTTTAACAAGATCGAGCCCCCCCTGATCTTTGAGTGTAACCAGGCATGCTCCTGCTGGAGAAGCTGCAAGAACCGCGTGGTGCAGAGCGGCATCAA
Seq A exon
GGTGCGGCTGCAGCTCTACCGGACGGCCAAGATGGGCTGGGGGGTCCGTGCCTTGCAGACCATTCCCCAGGGCACGTTCATCTGCGA
Seq C2 exon
GTACGTCGGGGAGCTGATCTCCGACGCCGAGGCAGACGTGAGAGAGGATGATTCTTACCTCTTCGACTTAGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630-'37-46,'37-44,39-46
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
PF0085623=SET=PU(15.9=56.7)
C2:
PF0085623=SET=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGCTCCAGGAGTTTAAC
R:
AGGTAAGAATCATCCTCTCTCACGT
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]