GgaEX1021834 @ galGal3
Exon Skipping
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2478575-2484246:+
Coord C1 exon
chr17:2478575-2478690
Coord A exon
chr17:2480511-2480597
Coord C2 exon
chr17:2484168-2484246
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTCATTTCCTCTTTTCCAGGAC
3' ss Score
11.11
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GATGGCCGACTCCTGCCTGAGTTCAACATGGCTGAGCCCCCACTGATCTTTGAGTGCAATCACGCGTGCTCATGCTGGCGGACCTGTAGGAACCGGGTGGTGCAGAATGGGCTCAG
Seq A exon
GACTCGATTGCAGCTCTATCGGACGCAAAAGATGGGCTGGGGTGTGCGAACGATGCAAGACATTCCACTGGGAACCTTTGTGTGCGA
Seq C2 exon
GTATGTTGGCGAGCTGATATCCGACTCCGAAGCAGATGTCCGTGAAGAGGATTCCTACCTCTTCGACCTTGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472-'42-40,'42-39,46-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
PF0085623=SET=PU(15.9=56.7)
C2:
PF0085623=SET=FE(24.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGAGTTCAACATGGCT
R:
TGTTGTCAAGGTCGAAGAGGT
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]