RnoEX0031244 @ rn6
Exon Skipping
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:1977074-1978546:-
Coord C1 exon
chr3:1978431-1978546
Coord A exon
chr3:1977587-1977673
Coord C2 exon
chr3:1977074-1977152
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCACCTATCTTGTTTTCCAGGGC
3' ss Score
10.7
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GACGGGCGACTTCTGCCTGAGTTTAACATGGCAGAACCACCCTTGATCTTCGAGTGCAATCATGCCTGCTCCTGCTGGAGGAACTGCCGCAATCGCGTGGTGCAGAATGGTCTCAG
Seq A exon
GGCAAGGCTGCAGCTTTATCGGACACAGGACATGGGCTGGGGTGTGCGGTCCCTTCAGGATATCCCGCTGGGCACCTTTGTCTGCGA
Seq C2 exon
ATACGTGGGGGAGCTGATTTCAGACTCCGAGGCTGATGTTCGGGAAGAGGACTCTTACCTCTTTGATCTTGACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242-'41-43,'41-42,42-43
Average complexity
S
Mappability confidence:
62%=100=25%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
PF0085623=SET=PU(15.9=56.7)
C2:
PF0085623=SET=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGACTTCTGCCTGAGTTTA
R:
AGAGTCCTCTTCCCGAACATCA
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]