MmuEX0016471 @ mm10
Exon Skipping
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24801507-24803129:-
Coord C1 exon
chr2:24803014-24803129
Coord A exon
chr2:24802021-24802107
Coord C2 exon
chr2:24801507-24801585
Length
87 bp
Sequences
Splice sites
3' ss Seq
ACCCTCTACTTGTTTTCCAGGGC
3' ss Score
9.98
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GATGGCCGACTTCTGCCTGAGTTTAACATGGCAGAACCACCCTTGATCTTCGAGTGCAATCATGCCTGCTCATGCTGGAGGAACTGCCGCAATCGTGTGGTGCAAAATGGTCTCAG
Seq A exon
GGCAAGGCTGCAGCTTTATCGGACACAGGACATGGGCTGGGGTGTGCGGTCCCTCCAGGATATCCCACTGGGCACCTTTGTCTGCGA
Seq C2 exon
ATACGTAGGGGAGCTGATTTCGGACTCTGAAGCTGATGTTCGGGAAGAGGACTCTTACCTCTTTGATCTTGACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
PF0085623=SET=PU(15.9=56.7)
C2:
PF0085623=SET=FE(24.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACTTCTGCCTGAGTTTA
R:
AGAGTCCTCTTCCCGAACATCA
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types