BtaEX6047459 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105433473-105435762:-
Coord C1 exon
chr11:105435647-105435762
Coord A exon
chr11:105434438-105434524
Coord C2 exon
chr11:105433473-105433551
Length
87 bp
Sequences
Splice sites
3' ss Seq
GACGTACCCATGTTTTCCAGGGC
3' ss Score
7.21
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GACGGTCGGCTGCTGCCAGAGTTCAACATGGCAGAGCCGCCCCTGCTGTTCGAGTGCAACCACGCCTGCTCCTGCTGGAGGACGTGCCGCAACCGCGTGGTGCAGAATGGCCTCAG
Seq A exon
GGCGAGGCTGCAGCTCTATCGGACACAGAACATGGGCTGGGGCGTCCGGTCCCTGCAGGACATCCCACTGGGCACCTTTGTTTGCGA
Seq C2 exon
GTACGTTGGGGAGCTTATTTCTGACTCGGAAGCTGATGTGCGGGAAGAAGACTCTTATCTCTTTGATCTTGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148-'35-34,'35-32,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
PF0085623=SET=PU(15.9=56.7)
C2:
PF0085623=SET=FE(24.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCAGAGTTCAACATGG
R:
AGAGATAAGAGTCTTCTTCCCGCA
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]