DreEX6083722 @ danRer10
Exon Skipping
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14553685-14555792:-
Coord C1 exon
chr21:14555677-14555792
Coord A exon
chr21:14553924-14554010
Coord C2 exon
chr21:14553685-14553763
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTATTATCATAATCTTTTAGGAC
3' ss Score
9.88
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GAGAGTCGTCTGCTGCCTGAGTTCAGTAATGAGGAGCCGCCTCTTATATTTGAGTGCAACCATGCCTGCTCCTGCTGGAGAACCTGCAAAAACCGTGTGGTACAGAACGGACTGAG
Seq A exon
GACAAGACTGCAGTTGTTCAAGACACAGATGATGGGATGGGGTGTCAAGACATTACAGGATATCCCTCAAGGAACATTTGTTTGCGA
Seq C2 exon
ATACGTGGGTGAGATCATCTCTGACGCCGAAGCAGATGTCAGAGAGAATGACTCCTATCTTTTCAGTCTGGACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634-'42-35,'42-34,43-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
PF0085623=SET=PU(15.9=56.7)
C2:
PF0085623=SET=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGTAATGAGGAGCCGCC
R:
CTTGCTGTCCAGACTGAAAAGA
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]