DreEX0029276 @ danRer10
Exon Skipping
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28892160-28895224:-
Coord C1 exon
chr5:28895109-28895224
Coord A exon
chr5:28894398-28894484
Coord C2 exon
chr5:28892160-28892238
Length
87 bp
Sequences
Splice sites
3' ss Seq
CATTATGGTCTCATTCGCAGGCT
3' ss Score
8.25
5' ss Seq
CGAGTATGA
5' ss Score
3.08
Exon sequences
Seq C1 exon
GATGGCCGATTGCTAAAAGAATTCTGCCGGGATGATCCACCCTTTCTGTTCGAGTGTAACCACGCCTGTTCCTGTTGGAGAACGTGCCGGAATAGAGTCATACAGAATGGCCTTCG
Seq A exon
GCTCAGGCTGCAGGTGTTTAGGACTGAGAGGATGGGTTGGGGAGTTCGAACACTGCAGGATATTCCTGAGGGAGGTTTTGTATGCGA
Seq C2 exon
GTTTGCTGGTGAAATAATTTCCGATGGAGAAGCTAACATTCGGGAAAACGACTCCTACATGTTCAACCTAGACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157-'27-29,'27-28,31-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
PF0085623=SET=PU(15.9=56.7)
C2:
PF0085623=SET=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAAAAGAATTCTGCCGGGA
R:
ACATGTAGGAGTCGTTTTCCCG
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]