MmuEX0016472 @ mm10
Exon Skipping
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24792281-24803129:-
Coord C1 exon
chr2:24803014-24803129
Coord A exon
chr2:24801507-24801585
Coord C2 exon
chr2:24792281-24792456
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTTTTCTTACTACAGATA
3' ss Score
10.22
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GATGGCCGACTTCTGCCTGAGTTTAACATGGCAGAACCACCCTTGATCTTCGAGTGCAATCATGCCTGCTCATGCTGGAGGAACTGCCGCAATCGTGTGGTGCAAAATGGTCTCAG
Seq A exon
ATACGTAGGGGAGCTGATTTCGGACTCTGAAGCTGATGTTCGGGAAGAGGACTCTTACCTCTTTGATCTTGACAATAAG
Seq C2 exon
GATGGAGAGGTATACTGCATTGACGCTCGGTTCTATGGGAATGTCAGCCGGTTCATAAACCACCACTGCGAACCCAACCTTGTGCCTGTGCGAGTGTTCATGTCACACCAGGACCTGCGGTTTCCCAGGATTGCCTTCTTCAGTACCCGCCTGATTCAGGCTGGGGAGCAGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
PF0085623=SET=FE(24.3=100)
C2:
PF0085623=SET=FE(54.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAATCGTGTGGTGCAAAAT
R:
GCGGGTACTGAAGAAGGCAAT
Band lengths:
179-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types