BtaEX6047460 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105429971-105434524:-
Coord C1 exon
chr11:105434438-105434524
Coord A exon
chr11:105433473-105433551
Coord C2 exon
chr11:105429971-105430146
Length
79 bp
Sequences
Splice sites
3' ss Seq
CGCCCTGCCCTGACCCACAGGTA
3' ss Score
10.69
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGCGAGGCTGCAGCTCTATCGGACACAGAACATGGGCTGGGGCGTCCGGTCCCTGCAGGACATCCCACTGGGCACCTTTGTTTGCGA
Seq A exon
GTACGTTGGGGAGCTTATTTCTGACTCGGAAGCTGATGTGCGGGAAGAAGACTCTTATCTCTTTGATCTTGACAACAAG
Seq C2 exon
GACGGAGAGCTGTACTGCATCGACGCGCGTTTCTATGGCAACGTCAGCCGCTTCATCAACCACCACTGTGAGCCCAATCTGGTGCCCGTGCGTGTGTTCATGTCCCACCAGGACCTGCGCTTCCCGCGGATCGCCTTCTTCAGCACCCGCCTGATTGAGGCCGGGGAGCAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148-'36-35,'36-34,39-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PU(15.9=56.7)
A:
PF0085623=SET=FE(24.3=100)
C2:
PF0085623=SET=FE(54.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGACACAGAACATGGGCT
R:
CCTGGTGGGACATGAACACAC
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]