GgaEX1021835 @ galGal4
Exon Skipping
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2071526-2078302:+
Coord C1 exon
chr17:2071526-2071612
Coord A exon
chr17:2075183-2075261
Coord C2 exon
chr17:2078127-2078302
Length
79 bp
Sequences
Splice sites
3' ss Seq
CCTTTCCTGTTTGCCTGCAGGTA
3' ss Score
12.87
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACTCGATTGCAGCTCTATCGGACGCAAAAGATGGGCTGGGGTGTGCGAACGATGCAAGACATTCCACTGGGAACCTTTGTGTGCGA
Seq A exon
GTATGTTGGCGAGCTGATATCCGACTCCGAAGCAGATGTCCGTGAAGAGGATTCCTACCTCTTCGACCTTGACAACAAG
Seq C2 exon
GACGGAGAGGTGTACTGCATAGATGCCCGTTTCTATGGCAACATCAGCCGCTTTATAAACCACCTCTGTGAGCCAAACCTCATTCCGGTGCGAGTCTTCATGTCTCACCAGGACCTCCGCTTCCCCAGGATCGCCTTCTTCAGCACGAGGCACATAGAGGCCGGAGAAGAAATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472-'44-41,'44-40,48-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PU(15.9=56.7)
A:
PF0085623=SET=FE(24.3=100)
C2:
PF0085623=SET=FE(54.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGGACGCAAAAGATGGGC
R:
GAGACATGAAGACTCGCACCG
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]