RnoEX0031246 @ rn6
Exon Skipping
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:1968386-1977673:-
Coord C1 exon
chr3:1977587-1977673
Coord A exon
chr3:1977074-1977152
Coord C2 exon
chr3:1968386-1968561
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTTTTCTCACTACAGATA
3' ss Score
10.99
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCAAGGCTGCAGCTTTATCGGACACAGGACATGGGCTGGGGTGTGCGGTCCCTTCAGGATATCCCGCTGGGCACCTTTGTCTGCGA
Seq A exon
ATACGTGGGGGAGCTGATTTCAGACTCCGAGGCTGATGTTCGGGAAGAGGACTCTTACCTCTTTGATCTTGACAATAAG
Seq C2 exon
GATGGAGAGGTGTACTGCATTGATGCTCGGTTCTACGGGAATGTCAGCCGGTTCATAAACCACCACTGCGAGCCCAACCTTGTGCCTGTGCGAGTGTTCATGTCACACCAGGACCTACGGTTTCCCAGGATTGCCTTCTTCAGCACCCGCCTGATTCAGGCTGGGGAACAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PU(15.9=56.7)
A:
PF0085623=SET=FE(24.3=100)
C2:
PF0085623=SET=FE(54.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTTCAGGATATCCCGCTG
R:
GCTGAAGAAGGCAATCCTGGG
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]