GgaEX1021835 @ galGal3
Exon Skipping
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2480511-2487287:+
Coord C1 exon
chr17:2480511-2480597
Coord A exon
chr17:2484168-2484246
Coord C2 exon
chr17:2487112-2487287
Length
79 bp
Sequences
Splice sites
3' ss Seq
CCTTTCCTGTTTGCCTGCAGGTA
3' ss Score
12.87
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACTCGATTGCAGCTCTATCGGACGCAAAAGATGGGCTGGGGTGTGCGAACGATGCAAGACATTCCACTGGGAACCTTTGTGTGCGA
Seq A exon
GTATGTTGGCGAGCTGATATCCGACTCCGAAGCAGATGTCCGTGAAGAGGATTCCTACCTCTTCGACCTTGACAACAAG
Seq C2 exon
GACGGAGAGGTGTACTGCATAGATGCCCGTTTCTATGGCAACATCAGCCGCTTTATAAACCACCTCTGTGAGCCAAACCTCATTCCGGTGCGAGTCTTCATGTCTCACCAGGACCTCCGCTTCCCCAGGATCGCCTTCTTCAGCACGAGGCACATAGAGGCCGGAGAAGAAATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472-'46-41,'46-40,48-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PU(15.9=56.7)
A:
PF0085623=SET=FE(24.3=100)
C2:
PF0085623=SET=FE(54.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGGACGCAAAAGATGGGC
R:
GAGACATGAAGACTCGCACCG
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]