DreEX6011320 @ danRer10
Exon Skipping
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28891827-28894484:-
Coord C1 exon
chr5:28894398-28894484
Coord A exon
chr5:28892160-28892238
Coord C2 exon
chr5:28891827-28892002
Length
79 bp
Sequences
Splice sites
3' ss Seq
GAGGATTTTGTTCTGTGCAGGTT
3' ss Score
7.28
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GCTCAGGCTGCAGGTGTTTAGGACTGAGAGGATGGGTTGGGGAGTTCGAACACTGCAGGATATTCCTGAGGGAGGTTTTGTATGCGA
Seq A exon
GTTTGCTGGTGAAATAATTTCCGATGGAGAAGCTAACATTCGGGAAAACGACTCCTACATGTTCAACCTAGACAATAAG
Seq C2 exon
GTTGGAGAGGCCTACTGCATTGATGGACAATTTTATGGTAATGTTAGCAGGTTTATGAATCATCTTTGTGAGCCCAATCTATTCCCAGTACGAGTGTTCACCAAACATCAAGACATGCGCTTTCCTCGTATTGCATTCTTTGCAAGCAAGCATATTCAAGCTGGAGATGAGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157-'31-30,'31-29,32-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PU(15.9=56.7)
A:
PF0085623=SET=FE(24.3=100)
C2:
PF0085623=SET=FE(54.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTGAGAGGATGGGTTGG
R:
TGGTGAACACTCGTACTGGGA
Band lengths:
171-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]