RnoEX0036005 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17175978-17180633:+
Coord C1 exon
chr18:17175978-17176089
Coord A exon
chr18:17180349-17180464
Coord C2 exon
chr18:17180533-17180633
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTTTTGGCCCCACCCTTTAGGTG
3' ss Score
9.13
5' ss Seq
TGGGCTTCC
5' ss Score
-20.43
Exon sequences
Seq C1 exon
TTCCGCCTGGTGGTGAAGACGGCCCTGAAGCTTCTGCTGGTCTTTGTGGAGTATTCTGAGTCCAATGCACCGCTTCTCATTCAGGCTGTTTCTGCTGTTGACACCAAAAGAG
Seq A exon
GTGAGCCCCAGCCTTCTCCATGGTGGTGAAGACGCCAGTAGACTCCATGACATACTCAGCAGCAGTGTCACCCCATTTGATGTTAGCGGGATCTCGCTCCTGGAAGATGGTGATGG
Seq C2 exon
TCATACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAAGGGGTCGTTGATGGCAACAATGTCCACTTTGCCAGTTGCAGAGCTGAAGGCAGCCCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230-'28-22,'28-21,29-22
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=NA
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(10.7=39.5)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000041961fB5560
Main Skipping Isoform:
ENSRNOT00000041961fB5563
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGCCTGGTGGTGAAGA
R:
CTGCCTTCAGCTCTGCAACTG
Band lengths:
206-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]