RnoEX0036025 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17175978-17182812:+
Coord C1 exon
chr18:17175978-17176089
Coord A exon
chr18:17181017-17181053
Coord C2 exon
chr18:17182718-17182812
Length
37 bp
Sequences
Splice sites
3' ss Seq
CTTGGCTTTACCTTCCTCAGGCC
3' ss Score
8
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
TTCCGCCTGGTGGTGAAGACGGCCCTGAAGCTTCTGCTGGTCTTTGTGGAGTATTCTGAGTCCAATGCACCGCTTCTCATTCAGGCTGTTTCTGCTGTTGACACCAAAAGAG
Seq A exon
GCCTCACAAGTCATGTTGGATTCAAAGTAAACAATGA
Seq C2 exon
GTGTCAAACCCTGGTCCAACATCATGGAAATCTTGGAGGAAAAAGATGGAGTTGACACAGAACTCTTGGTTTATGCAATGACTCTAGTAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230_MULTIEX1-3/10=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(10.7=39.5)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000041961fB5565
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACGGCCCTGAAGCTTC
R:
TCCATGATGTTGGACCAGGGT
Band lengths:
126-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]