RnoEX0040553 @ rn6
Exon Skipping
Gene
ENSRNOG00000054725 | Gtf3c4
Description
general transcription factor IIIC subunit 4 [Source:RGD Symbol;Acc:1592609]
Coordinates
chr3:7415847-7422738:-
Coord C1 exon
chr3:7422321-7422738
Coord A exon
chr3:7417996-7418065
Coord C2 exon
chr3:7415847-7417673
Length
70 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCTTTTTTTCGGAGCTG
3' ss Score
-0.47
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CTCTGGGAGCGGCCGAGCGACGGTGGCGAGCGCTCGGTGTGCCCGGTAACTCGACCTCCTCGCCCGGAGTAAGATGAGCGAGGCGGACCAAGCCCGGGTGGGGCCCAAGGCCGACGAACCTTCGTCGCCCGCAGAGGAGAAGGACGAAGGGGGCGGGAAGGAGGCGGCTGCCGACGCGGCCCCGGGGCCCAGCGCCTCGTTTCGCCTCATGGTGACTCGGCGGGAGCCTGCCGTGAAGCTGCAGTACGCTGTGAGCGGGTTGGAGCCGCTCTCCTGGTCTGAGGACCACCGTGTGTCTGTGTCCACGGCCCGCAGCATCGCCGTGCTAGAGCTTATCTGCGATGTGCACAACCCAGGCCAGGACCTGGTGATCCACCGCACCTCGGTACCCGCTCCTCTCAACAGCTGCCTCCTCAAG
Seq A exon
CTGGGGACCGAACCCAGAGCCTTGCGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCACCCCC
Seq C2 exon
GTTGGCTCGAAAACAGAAGTTGCTGAGTGCAAGGAAAAGTTTGCTTCCTCTAAAGACCCCACCATCAGCCAGACTTTCATGCTGGACAGGATGTTCAACCCTGAGGGGAAGGCATTGCCCCCAATGCGGGGTTTCAAATACACTAGCTGGTCTCCCATGGGTTGTGATGCAAATGGCAGGTGCCTCTTGGCAGCGCTGACCATGGACAATCGCCTGACCGTGCAGGTAAACCTCAACAGACTCCAATGGGTTCAGCTGGTTGATCTGACTGAGATTTATGGAGACCGTCTTTATGAGACCAGTTATAGACTGTCTAAAAATGAGGCTCCTGAGGGAAACCTTGGGGATTTTGCTGAGTTTCAGAGGAGACACAGCATGCAGACCCCAGTCAGAATGGAATGGTCGAGTATCTGTACCACTCAGCAGGTCAAGCACAACAACGAGTGCCGGGATGTGAGCAGCGTGCTCCTGGCCGTCCTCTTTGAGAACGGGAATATAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054725-'0-4,'0-3,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.083 C2=0.099
Domain overlap (PFAM):
C1:
PF126572=TFIIIC_delta=PU(29.9=50.4)
A:
PF126572=TFIIIC_delta=PD(25.9=87.5)
C2:
PF126572=TFIIIC_delta=PD(69.1=22.0)
Main Inclusion Isoform:
ENSRNOT00000088339fB6333
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGCTAGAGCTTATCTGCG
R:
GAAAGTCTGGCTGATGGTGGG
Band lengths:
176-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]