RnoEX0040555 @ rn6
Exon Skipping
Gene
ENSRNOG00000054725 | Gtf3c4
Description
general transcription factor IIIC subunit 4 [Source:RGD Symbol;Acc:1592609]
Coordinates
chr3:7415847-7422738:-
Coord C1 exon
chr3:7422321-7422738
Coord A exon
chr3:7418355-7418456
Coord C2 exon
chr3:7415847-7417673
Length
102 bp
Sequences
Splice sites
3' ss Seq
TAATCCCAACATTCCTTTAGTTA
3' ss Score
2.6
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTCTGGGAGCGGCCGAGCGACGGTGGCGAGCGCTCGGTGTGCCCGGTAACTCGACCTCCTCGCCCGGAGTAAGATGAGCGAGGCGGACCAAGCCCGGGTGGGGCCCAAGGCCGACGAACCTTCGTCGCCCGCAGAGGAGAAGGACGAAGGGGGCGGGAAGGAGGCGGCTGCCGACGCGGCCCCGGGGCCCAGCGCCTCGTTTCGCCTCATGGTGACTCGGCGGGAGCCTGCCGTGAAGCTGCAGTACGCTGTGAGCGGGTTGGAGCCGCTCTCCTGGTCTGAGGACCACCGTGTGTCTGTGTCCACGGCCCGCAGCATCGCCGTGCTAGAGCTTATCTGCGATGTGCACAACCCAGGCCAGGACCTGGTGATCCACCGCACCTCGGTACCCGCTCCTCTCAACAGCTGCCTCCTCAAG
Seq A exon
TTAGATGGAAGGCAGAGGTGAAGAATCAGGAGGAAGCTGACCAGCTAGCTAACCTGGAGTACACAAGTACAACAGAAACAAGACAGCCCTTACCTCAACAAG
Seq C2 exon
GTTGGCTCGAAAACAGAAGTTGCTGAGTGCAAGGAAAAGTTTGCTTCCTCTAAAGACCCCACCATCAGCCAGACTTTCATGCTGGACAGGATGTTCAACCCTGAGGGGAAGGCATTGCCCCCAATGCGGGGTTTCAAATACACTAGCTGGTCTCCCATGGGTTGTGATGCAAATGGCAGGTGCCTCTTGGCAGCGCTGACCATGGACAATCGCCTGACCGTGCAGGTAAACCTCAACAGACTCCAATGGGTTCAGCTGGTTGATCTGACTGAGATTTATGGAGACCGTCTTTATGAGACCAGTTATAGACTGTCTAAAAATGAGGCTCCTGAGGGAAACCTTGGGGATTTTGCTGAGTTTCAGAGGAGACACAGCATGCAGACCCCAGTCAGAATGGAATGGTCGAGTATCTGTACCACTCAGCAGGTCAAGCACAACAACGAGTGCCGGGATGTGAGCAGCGTGCTCCTGGCCGTCCTCTTTGAGAACGGGAATATAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054725_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.000 C2=0.099
Domain overlap (PFAM):
C1:
PF126572=TFIIIC_delta=PU(29.9=50.4)
A:
PF126572=TFIIIC_delta=PD(3.2=28.6)
C2:
PF126572=TFIIIC_delta=PD(69.1=22.0)
Main Inclusion Isoform:
ENSRNOT00000088339fB6334
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGCAGTACGCTGTGAG
R:
TGGCTGATGGTGGGGTCTTTA
Band lengths:
255-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]