RnoEX0040756 @ rn6
Exon Skipping
Gene
ENSRNOG00000030530 | Gzmm
Description
granzyme M [Source:RGD Symbol;Acc:620022]
Coordinates
chr7:12895432-12899004:-
Coord C1 exon
chr7:12898911-12899004
Coord A exon
chr7:12896799-12896965
Coord C2 exon
chr7:12895432-12895591
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCCTTCTCTTCTTAGTTT
3' ss Score
10.58
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGGGCCCCTTCCCCCAGGGACCACCAGTCCTGTGCCAGGATGGAGGTCCGCTGGTCCCTGCTGCTCCTGCTGGCCCTGAAAACACTGTGGGCAG
Seq A exon
TTTCAAGAATTGCTGGGCAGCGGTGGCCACACCTTTAATCTCTGGGTTCTTGACCAGCCTGATCTACAAAGGGAGTTCTAAGAAAGCCAGAGCTACATAGAGAAACCCTGGCTGTAAAATAAAATAAAGTGTCAAGAATATAAAACAGAACTCTGCTCTGTTCTCAG
Seq C2 exon
TAGGCAACAGATTTGAGGCCCAGATCATTGGGGGTCGAGAGGCAGTCCCGCACTCCCGCCCATACATGGTCTCGCTACAGAATACCAAGTCCCACGTGTGTGGGGGAGTCCTCGTGCATCAGAAGTGGGTGTTGACCGCTGCCCACTGCCTGTCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030530_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(20.0=83.3)
Main Inclusion Isoform:
ENSRNOT00000011086fB6365
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGGACCACCAGTC
R:
GTTCAGACAGGCAGTGGGC
Band lengths:
242-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]