RnoINT0068861 @ rn6
Intron Retention
Gene
ENSRNOG00000030530 | Gzmm
Description
granzyme M [Source:RGD Symbol;Acc:620022]
Coordinates
chr7:12895432-12899004:-
Coord C1 exon
chr7:12898911-12899004
Coord A exon
chr7:12895592-12898910
Coord C2 exon
chr7:12895432-12895591
Length
3319 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGCCCTCCCTCCCTTCTCAGTAG
3' ss Score
7.8
Exon sequences
Seq C1 exon
GGGGCCCCTTCCCCCAGGGACCACCAGTCCTGTGCCAGGATGGAGGTCCGCTGGTCCCTGCTGCTCCTGCTGGCCCTGAAAACACTGTGGGCAG
Seq A exon
GTGAGCATGAGGGAGAAACAGGCCTAGAGCCTGGTCTCCAGAGGGCTGTGGATGGGAGAGCCTTTGTGTGCAGGGAAATTAGCAGATGCTTCAGATCCCTGGGAAACAGCATCTAAAAAAGGAGAGCATACTCAGTAAAAGAAAACAGTGAGCATAGCCTGGCGACAGACAGGTCTGTGAGCTCAGGATTTGAGGGGTCTGAGGCAGAAGGATTGCCATGAGTTCAGTTAGCGTGAGACCCTATCTGGAGAAGCAAAATGGGATATGCTAGGCTTACATTGGTAGGGCATATGCCTGGCATACACAAAGCCAGGCCCCATCCTGCGTTAAACCAGGCATGGTGGAGCTTACCTGTTGTCCTAGCACTGGAAGTGGAGACCCGAGGATCGGGGATTCAAAGCCTTCCTCAGCTCTACAGTGAGTTTGAGGCCATCTGGGCTGCAGAGACTCCTGAGTCCTGACATTAAAGGTGTGCAGGTACCACAGATCGCTTTCTTTTTGTAAAGGTCTCACCCTGGAGCCCTGGCTGGCCTAGAATTTACAAGTAAATTCTTGAGTTCAGGCAATCAAAGGCACGTGCCACCGTGCTAGGGCGTGCTTCTTTTTCCCAAAGGAGTGTCTCCTGAGGTCCAGATGGCCTCAAACTCACTGTAGAGGTGTGTCTCAGCTTTAACCCCAGCTCTAGGGAAGGAACCACAGGATCCGGTCCCTGGGGCTCCAGGAATTTGCCGAATCTGAGCTCCAGATTCGGTGAGAGGCCTTGTCTCAGTTACAGTCCGTAAAGGGTAATGCAGAAGATGCCAGACTTGGTCTCTGACCTCCGTATATATACATCCGTATGCATAAATACAAGTTTCTTTTTGAGACAAGATCTCACTAGTAGTCCTAGCTGACCTGGAACTCACAGAATCAGCTCTGTCTCCTGAGCGCTGGGTTATGCACCACCTCCCAATTTTTTATTTTATTTTTTTTTTTTTGGAAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAATCCCCACCTCCCAACTTTTGATGCTCACATTAGCTTGGAATCTTGTAGAACCTCTCTAAAGGACAAGGAGTGAGAGAGGAGGTTGGCTTTTGCCAGGATAAGAACTTTGAAAGTTATGGTCTATCTACTGGTCTCTGACGCTGGCCCCGTAGCTTCTGGTCTTGAGAGTCTGTGGAGACCCTGGCACAGTGCAGCCACAGCCGATCTCAAACTCCTAGCAATTCTCTCTCAGCTTCCTTTACAGTGGGATTTTAAAGTATGAAGAGCTGGGCCTGTACCTCCGTGGGTAGAGCAAGGTCTTGTCCAGCGTGTGAGAGGTCCTGGGTTCCACCAGATAGCACATGCCTATCTGTGGAGGATTGGGAGTTCAAAGTCATCCTCAGCGACATTAGCTCCTAGGTAACCTGGGCTCTGTGAGACATTGTCTCAAAATAAACCTTTTGGCTTTTTAAGAAGGAAGGAGAGAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAGAAGGAAGGAAAGAAAATAACACTCATAGGTGGGAGACTTCCTTGGGTTGGGTGGTCAAGAGCGATTTGATTGTGGGTGGTGGCTGCAAGTTCTTCAGACAGAGGTCAGCCTGCTGGTCTGATTGTGGGTGTGAGAAGTGACAGAGGTGACACTTTCCCAGAGAAAATTTGGTTTCTCTTTAGACTTGACTTTTGTTTCTTTTTTCTTCCCCCTCCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTTCTCCTCCTCCTCTTCTTCCTCATCCTCCTCCTCTTCCTTCTCTTCTTAGTTTCAAGAATTGCTGGGCAGCGGTGGCCACACCTTTAATCTCTGGGTTCTTGACCAGCCTGATCTACAAAGGGAGTTCTAAGAAAGCCAGAGCTACATAGAGAAACCCTGGCTGTAAAATAAAATAAAGTGTCAAGAATATAAAACAGAACTCTGCTCTGTTCTCAGGTAAAGGCTCTGGAATAGGACCAGACCCAACAAAGTATTGTTGGGACCTTAAAGACTGGCCATGCAGTTCAGAGCAAGGCAGGGTGTCTACAATGTGATGGGAAATCACTTGGATCACAAACTCTCATGAATATTTATTTTAAATGTTGTTTGTTTTGTTTTACTTGCAACAGTTTTCTCTGTGTCCTGCTAACTCTGTAGACCAAGCTGGCTTCAAAACTCAGAGATCTGCCCGCCTCTGCCTCCGGGCTGAGATTAAAGCCTGGCTTATTTAAAAATTTTAATATGATCCTATTTCTACCTCCCCAGGACTGGGATGATGGGTGTGTGCCACTAGACCTGGATTCTGTAGTTCGTGGGGACAGAACCCAGGGCTCTGTGTGTGACAGGCAAACGCTCTGCCCACTGAGTATAGCCTGGTGTTCTGTATCAACCCTTCACAGAAGTTTGCAGAGAAACAGCTCACACCGTGCACAGCTCACTGAAATTCAGAAGCCACACAAGAATGGAGGCACTCCTACATCCCCCATGAACACACCCCGACACCCTAGCACCCACAAATCTACATCCTGTCAGAATTTCACACTGACTTTTTGTGACTGATTTTTCCCCCTGACCACCATCTTCTCAAGGCCCTGTCAAGTGTCAGAACCCCTCTTGTCTGTGGCTATGTAATATTCCAATGTGTGAGCAGAGCATGAATCAGTTCCTCATACAGGCATGTATGTATGAATGTGTGTATGTATGTAGAAGTGTGAGTGCAATGCCCAAAGGGGCTAGAGTTCCCAGGGGAGGGCAAACGTGTATGTATGTATGTGTGTGTGTATGTATGTATTGTATGTATGTGCATGTATGTATTTATGTATGTATGTGGGAGGGTGAGTGCAAAGCCCAAAGAGGCATCTGATCCCCTGGAGCTGGAGTTCTAGGGAGCTGTAAGTTGCCTGGTGTGGGTGGTAGGATTTGAACTCTGGACCTCTGGAAGAGCAGCCAGCTCTCTTACCCTCTGAGCCATCCCTCCAGCTCCTCAGTCACACTTTAAGCCCAGCCTCTGACAGCTGACTAGTGTGTGAGCAGTAGGGCCTGGTGGGGCTTGAGACAGGGATCAGTGAGGACTTAAGACAGCAGACCTGCCAGATTCAGGGCTTCCAGGCCCAGCGGAAAGTTGGGGTACAGCACCTCCAAACAGCCCTCCCTCCCTTCTCAG
Seq C2 exon
TAGGCAACAGATTTGAGGCCCAGATCATTGGGGGTCGAGAGGCAGTCCCGCACTCCCGCCCATACATGGTCTCGCTACAGAATACCAAGTCCCACGTGTGTGGGGGAGTCCTCGTGCATCAGAAGTGGGTGTTGACCGCTGCCCACTGCCTGTCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030530:ENSRNOT00000011086:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.0=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]