RnoEX0040946 @ rn6
Exon Skipping
Gene
ENSRNOG00000001524 | Hat1
Description
histone acetyltransferase 1 [Source:RGD Symbol;Acc:1305716]
Coordinates
chr3:58066924-58070068:+
Coord C1 exon
chr3:58066924-58067040
Coord A exon
chr3:58069011-58069112
Coord C2 exon
chr3:58069718-58070068
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATGCATGCCTTTAATCCCAGCCA
3' ss Score
2.37
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CAACATGCTAGACGGGTTTATGAAATTCTCCGACTGCTGGTGACTGACATGAGTGACGCGGAGCAGTGCAGAAGCTACAGACTGGATATTAAAAGGAGACTAATCAGCCCTTACAAG
Seq A exon
CCATGGGAGGAGGCAGAGGCAGATGGTAGATCGCAGTTCCAGCCAACAGAGAGAGGTATTACATACCTCCAACTTCAGCCAAACAGAGCCTGTCTCAGTTAG
Seq C2 exon
AAAAAGCAGACAGATCTTGCCAAGATGAGGAAATGCCTGAGACCAGAAGAGCTGACGAATCAGATGAACCAGATAGAGATAAGTGTGCAGCACGAGCAGCTGGAGGAGCAGTTTCAGGAGCTGGTGGAGGACTACCGGCGTGTCATTGAGCGCCTTGCTCAAGAGTGAAGCCCTTGTTCCCTGGATACCTGCGATTTCTGTGCATTGTGCTGTGAAACCTCTGATGACCCTAAAGTTATCTATGTTCTCCTTAGTGGAATATTTCCTTTTGAGAGATTGTATATTTTAAAATACTGTCTAGAGTTTATGAACATATATTGCATTAATAAAAGATGGCTTGTGAAATACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001524-'16-19,'16-18,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.152 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000002085fB6392
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGTGCAGAAGCTACAG
R:
ATCGCAGGTATCCAGGGAACA
Band lengths:
253-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]