RnoEX0040945 @ rn6
Exon Skipping
Gene
ENSRNOG00000001524 | Hat1
Description
histone acetyltransferase 1 [Source:RGD Symbol;Acc:1305716]
Coordinates
chr3:58062329-58070068:+
Coord C1 exon
chr3:58062329-58062480
Coord A exon
chr3:58066924-58067040
Coord C2 exon
chr3:58069718-58070068
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCTTACTTCATTTGTTTAGCAA
3' ss Score
4.97
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
CGGAAGATCCATCCAAAAGCTATGTGAAACTAAGAGACTTTGTACTTGTGAAACTTTGTCAAGATTTGCCCTGTTTCTCCCGGGAAAGATTACTGCAAGGATTCAATGAAGATATGGCGATACAGGCACAGCAGAAGTTCAAAATAAATAAG
Seq A exon
CAACATGCTAGACGGGTTTATGAAATTCTCCGACTGCTGGTGACTGACATGAGTGACGCGGAGCAGTGCAGAAGCTACAGACTGGATATTAAAAGGAGACTAATCAGCCCTTACAAG
Seq C2 exon
AAAAAGCAGACAGATCTTGCCAAGATGAGGAAATGCCTGAGACCAGAAGAGCTGACGAATCAGATGAACCAGATAGAGATAAGTGTGCAGCACGAGCAGCTGGAGGAGCAGTTTCAGGAGCTGGTGGAGGACTACCGGCGTGTCATTGAGCGCCTTGCTCAAGAGTGAAGCCCTTGTTCCCTGGATACCTGCGATTTCTGTGCATTGTGCTGTGAAACCTCTGATGACCCTAAAGTTATCTATGTTCTCCTTAGTGGAATATTTCCTTTTGAGAGATTGTATATTTTAAAATACTGTCTAGAGTTTATGAACATATATTGCATTAATAAAAGATGGCTTGTGAAATACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001524-'14-19,'14-16,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=PD(14.3=25.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATACAGGCACAGCAGAAGT
R:
GCACAATGCACAGAAATCGCA
Band lengths:
245-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]