MmuEX6102107 @ mm9
Exon Skipping
Gene
ENSMUSG00000027018 | Hat1
Description
histone aminotransferase 1 [Source:MGI Symbol;Acc:MGI:96013]
Coordinates
chr2:71272091-71279679:+
Coord C1 exon
chr2:71272091-71272263
Coord A exon
chr2:71276753-71276869
Coord C2 exon
chr2:71279225-71279679
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTCATTTGTTTAGCAA
3' ss Score
6.94
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TACTGTTTTTTCATTTTTTAGCGGAAGATCCGTCCAGAAGCTATTTGAAACTAAGAGACTTTGTGCTTGTGAAGTTTTGTCAATTTTTGCCCAGTTTCTCCCGGGAAAGATTACTGCAAGGATTCAGTGAAGATATGGCAATACAGGCACAGCAAATGTTCAAAATAAATAAG
Seq A exon
CAACATGCTAGAAGGGTTTATGAAATTCTTCGACTGCTGGTGACTGACATGAGCGATGCTGAGCAATACAGAAGCTACAGACTGGATATTAAAAGAAGACTAATTAGCCCTTACAAG
Seq C2 exon
AAAAAGCAGAGGGATCTTGCCAAGATGAAGAAATGCCTGAGACCAGAAGAGCTGACAAATCAGATGAACCAGATAGAAATAAGTGTGCAGCATGAGCAGCTGGAAGAGAGATTTCAGGAGCTGGTGGAGGACTACCGGCGTGTCATTGAGCGACTTGCTCAAGAGTGAAGCCCTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACCCTAAAGTTATCTATGTTCTCCTTAGTGGAATATTTCCTTTTGAGAGATTGTATATTTTAAAATACTGTCTAGAGTTTATGAACATATATTGCATTAATAAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAATAAATGATTGGTTGTAGTATATTAAGTTATAATGTGGTGCTTAAGGCTTTAGGATAAATATTTTGAGTTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027018-'14-17,'14-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=PD(25.0=44.8)
A:
PF138371=Myb_DNA-bind_4=PU(16.4=28.2)
C2:
PF138371=Myb_DNA-bind_4=PD(80.6=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTTTCTCCCGGGAAAGA
R:
GGGCTTCACTCTTGAGCAAGT
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: