DreEX0036892 @ danRer10
Exon Skipping
Gene
ENSDARG00000034916 | hat1
Description
histone acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-99]
Coordinates
chr9:3332826-3342758:+
Coord C1 exon
chr9:3332826-3332977
Coord A exon
chr9:3338936-3339052
Coord C2 exon
chr9:3342290-3342758
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGGTCTAATTTTCAGAAA
3' ss Score
7.83
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CGGAAGATCCATCTGAAAACTATGTGAAGCTGAGGGACTTTGTGCTGGTGAAGCTCTGCTTGACTCTGCCGTCATTTGCCAGCGAGAAACTTTCCCAGGGTTTCAGTGAAGAGATGGCATCTGAGGCCAGAGAGAAACTCAAGATCAACAAG
Seq A exon
AAACATGCACGACGTGTTTATGAGATTCTGCGTCTCCGAAATACAGACATGAACGATGAGAAGAAAGCCCGAGAGTTTCGCTTGGAGGTGAAAAAGCGGCTCTTCGGACCCTACAGA
Seq C2 exon
AAGAACCAGCGTGAGCTGACGAAGATGCGTAAATGTTTGAGACCCGAGGAGCTGGCGTCCCACATCAGCCAGATGGACACAACGCTGCAGCACGAGGAACTGGAGAAAAGCTACCAGGACGTGGTGGCTGAATATCGCAGAGTCCTGGAGCGACTGGCTCAAGTGTGAGGACAGGAGACTGGAAAGACTGGCTGACACCCACACACAGATCTTTGGCATTGTACCCAGTGTTAATAAGGATTTAAACGTGATCCATCCACATTTGTGATAGACAGACAGACAGATAATGGGCAGTTGTTCAGAATAAGAGATGAGTGCATTGGTCTACTGTGGAGATGATTTTGTTAACGCTTTTTTCCATCAAATGATTTTCCTTGAAATGTAAAAAAAAATGTAGATTTCGAAGCACTTCCTTAAGAGAACAAATAAAATGTTTTGTATATTGCTCAAATAAATGGTTTGCCATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034916_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.026 C2=0.127
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=FE(32.5=100),PF049058=NCD2=FE(36.0=100)
A:
PF135081=Acetyltransf_7=PD(16.2=64.1),PF049058=NCD2=FE(27.3=100)
C2:
PF049058=NCD2=PD(24.5=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGAAACTTTCCCAGGGTT
R:
CCAGTCTCCTGTCCTCACACT
Band lengths:
253-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]