BtaEX0016685 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010118 | HAT1
Description
Bos taurus histone acetyltransferase 1 (HAT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034347]
Coordinates
chr2:24606880-24617125:-
Coord C1 exon
chr2:24616974-24617125
Coord A exon
chr2:24614407-24614523
Coord C2 exon
chr2:24606880-24607317
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTCTTCTTTGGTTTATTAGCAA
3' ss Score
4.56
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CGGAAGATCCATCCAAAAGCTATGTGAAATTGAGAGACTTTGTGCTTGTGAAGTTTTGTCAAGATTTGCCCTGTTTTTCCCGGGAAAAGTTAATGCAAGGATTCAGTGAAGATATGGCAATAGAGGCTCAACAGAAGTTCAAAATAAATAAG
Seq A exon
CAACATGCTAGACGGGTTTATGAAATTCTTCGACTACTGGTAACTGACATGAGTGATGCTGAACAATACAGAAGCTATAGACTGGATATTAAAAGAAGACTAATTAGCCCATATAAG
Seq C2 exon
AAAAAACAGAGAGATCTTGCTAAAATGAGAAAATGTCTCAGACCGGAAGAACTGACAAACCAGATGAACCAGATAGAAATAAGCATGCAACATGAACAGCTGGAAGAAAGCTTTCAGGAACTCGTGGAAGATTATCGACGTGTCATTGAACGCCTCGCTCAAGAGTAGAGGTTATACTTCTCTGTACAGAAAGTTTGGAAATTTCTGTACATGTGTTGTGAAAATCAGATGATGACTTTAATTTTAAAAAATCTTGTAACATTTTGCTTACATTAAAAGTTATCTATCTTTAGTTGAATATTTTCTTTTGGAGAGATTGTATATTTTAAAATACTGTTTAGAGTTTATGAGCATATATTACATTAAAAAAGATATAGCTTCTGAAATACCACTGCAATTACTTCCCTTCTTAAATAGTGTAATAAATGCTTAGTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010118_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=PD(21.0=41.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTGCCCTGTTTTTCCCGG
R:
CTACTCTTGAGCGAGGCGTTC
Band lengths:
258-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development