GgaEX1028064 @ galGal4
Exon Skipping
Gene
ENSGALG00000009525 | HAT1
Description
histone acetyltransferase type B catalytic subunit [Source:RefSeq peptide;Acc:NP_989538]
Coordinates
chr7:17393716-17397706:-
Coord C1 exon
chr7:17397555-17397706
Coord A exon
chr7:17396173-17396289
Coord C2 exon
chr7:17393716-17394125
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTTTCTGTTGGTTAGCAA
3' ss Score
3.71
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
CTGAAGATCCATCTGAAAACTACATAAAGCTAAGAGACTTTGTTCTTGTAAAGCTCTGTCAAGACTTGCCTTGCTTTTCCCCAGCAAAGTTAATGCAAGGCTTCAGCCAAGAAATGGTAATGGAAGCTCAACAGAAGCTGAAAATAAATAAG
Seq A exon
CAACACACAAGGCGAGTATATGAAATTCTCCGATTGCGTGCAACAGATATGGGCGATGCAGAACAATCCAGAAGCTACCGGTTGGATGTTAAAAGAAGGCTGATTGGCCCCTATAAG
Seq C2 exon
AAGAAGCAGAGAGAACTTGCCAAGATGAGAAGGTGCTTAAGACCAGAGGAGTTGACAAATCAGTTGAACCAAATAGACCTAAACATGCAACATGAACAGTTAGAAGAGAGCTTCCAACAACTCGTTTCAGATTACCGAAGAGTCCTAGAACGACTTGCGCAAGCATGAGGATCCGACCTGTACAGGAAACTTGCAGATTTCTACACAGTGTTATGAAGCACATCCTTAATTGCCACTTAACTGCAAAAAAAGCAAACCTTGTGACGTTTTAATCACACTAAGGGTGAATTGTGTCTCTGTGCATTTTGAATATTTTCTATTTTTGTGTTGTAGATTTAAAATGTTGTTCTTCTTCAAGTTTGGGAGCACTTACTGCTGAAATAAACTGTAGATTCTCAGATACAATAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009525-'23-23,'23-21,24-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=PD(13.8=25.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTGCCTTGCTTTTCCCC
R:
GCGCAAGTCGTTCTAGGACTC
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]