MmuEX6102107 @ mm10
Exon Skipping
Gene
ENSMUSG00000027018 | Hat1
Description
histone aminotransferase 1 [Source:MGI Symbol;Acc:MGI:96013]
Coordinates
chr2:71434034-71441622:+
Coord C1 exon
chr2:71434034-71434206
Coord A exon
chr2:71438696-71438812
Coord C2 exon
chr2:71441168-71441622
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTCATTTGTTTAGCAA
3' ss Score
6.94
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TACTGTTTTTTCATTTTTTAGCGGAAGATCCGTCCAGAAGCTATTTGAAACTAAGAGACTTTGTGCTTGTGAAGTTTTGTCAATTTTTGCCCAGTTTCTCCCGGGAAAGATTACTGCAAGGATTCAGTGAAGATATGGCAATACAGGCACAGCAAATGTTCAAAATAAATAAG
Seq A exon
CAACATGCTAGAAGGGTTTATGAAATTCTTCGACTGCTGGTGACTGACATGAGCGATGCTGAGCAATACAGAAGCTACAGACTGGATATTAAAAGAAGACTAATTAGCCCTTACAAG
Seq C2 exon
AAAAAGCAGAGGGATCTTGCCAAGATGAAGAAATGCCTGAGACCAGAAGAGCTGACAAATCAGATGAACCAGATAGAAATAAGTGTGCAGCATGAGCAGCTGGAAGAGAGATTTCAGGAGCTGGTGGAGGACTACCGGCGTGTCATTGAGCGACTTGCTCAAGAGTGAAGCCCTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACCCTAAAGTTATCTATGTTCTCCTTAGTGGAATATTTCCTTTTGAGAGATTGTATATTTTAAAATACTGTCTAGAGTTTATGAACATATATTGCATTAATAAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAATAAATGATTGGTTGTAGTATATTAAGTTATAATGTGGTGCTTAAGGCTTTAGGATAAATATTTTGAGTTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027018-'22-25,'22-24,27-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=PD(25.0=44.8)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000112122fB11003
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTTTCTCCCGGGAAAGA
R:
GGGCTTCACTCTTGAGCAAGT
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types