RnoEX0042222 @ rn6
Exon Skipping
Gene
ENSRNOG00000020638 | Hmx2
Description
H6 family homeobox 2 [Source:RGD Symbol;Acc:1565366]
Coordinates
chr1:203515609-203516739:+
Coord C1 exon
chr1:203515609-203515695
Coord A exon
chr1:203516303-203516373
Coord C2 exon
chr1:203516639-203516739
Length
71 bp
Sequences
Splice sites
3' ss Seq
GACTTTCCCTGCTAGAGCAGATG
3' ss Score
-0.73
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
ATGTCCCCTTGGCAGGCCAAAGTCAGAGACCACACTTGCCTGGGAAACTGGAAGTGGAGCCTGGGAGAATGAGAAGGAGGTGAAAAG
Seq A exon
ATGGCGTTGGTTGACCTTTTAACAAACAAACGAGGAGGAGGGTAAAGAGGCGTCCTCAACATAACTGTGCA
Seq C2 exon
GAAGGCGGTGCTCGTCCGGTAACGCTAGCTTACTCTTCCACAAAGATGAGTCTCTGGGTGAAACTGCAAAGTCTGGGCGCTGAGGCTGCAAAAGAGTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020638-'0-2,'0-1,1-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCAAAGTCAGAGACCAC
R:
AACTCTTTTGCAGCCTCAGCG
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]