RnoEX0042223 @ rn6
Exon Skipping
Gene
ENSRNOG00000020638 | Hmx2
Description
H6 family homeobox 2 [Source:RGD Symbol;Acc:1565366]
Coordinates
chr1:203515609-203523358:+
Coord C1 exon
chr1:203515609-203515695
Coord A exon
chr1:203521013-203521281
Coord C2 exon
chr1:203522130-203523358
Length
269 bp
Sequences
Splice sites
3' ss Seq
CCGATTTCTTATGAACCCAGGAT
3' ss Score
3.91
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATGTCCCCTTGGCAGGCCAAAGTCAGAGACCACACTTGCCTGGGAAACTGGAAGTGGAGCCTGGGAGAATGAGAAGGAGGTGAAAAG
Seq A exon
GATGGGCAGCAAGGAAGATGTGGGGAAGGGATGTCCGGCGGCCGGTGGCGTCTCCAGCTTCACCATCCAGTCCATCCTGGGCGGGGGCCCCTCCGAGGCACCGCGGGAGCCCGCCGGGTGGCCAGCCAGGAAACGCAGCTTGTCTGTGTCCTCGGAGGAGGAGGAGCCGGAGGAAGGCTGGAAGGCTCCGGCTTGCTACTGCCCAGATCCGCACGGCCCCAAGGAGCCAAGCCCTAAGCACCATCCCCCCATCCCTTTCCCTTGCCTGG
Seq C2 exon
GTACCCCCAAGGGCAGCGGAGGCGCAGGGCCTGCGGCCTCGGAGCGCACGCCTTTCCTTTCTCCTTCTCACCCGGACTTTAAGGAAGAGAAGGAGAGGCTCTTGCCCGCAGGCTCGCCTTCTCCGGGCCCGGAGCGGCCACGGGACGGCGGTGCAGAGCGCCAAGCCGGAGCGGCCAAGAAGAAGACGCGCACCGTCTTCTCCCGCAGCCAAGTGTACCAGCTCGAGTCCACCTTCGACATGAAACGCTACCTTAGCAGCTCGGAGCGCGCTTGCCTCGCCTCCAGCCTGCAGCTCACCGAGACCCAGGTTAAGACTTGGTTTCAGAATCGCCGCAACAAGTGGAAGCGACAGCTTTCCGCCGAGCTAGAGGCGGCCAACATGGCACACGCGTCGGCGCAGACTCTCGTGGGCATGCCGTTGGTATTTCGGGACAGTTCGCTACTGCGAGTGCCGGTGCCACGCTCTCTCGCCTTTCCGGCTCCGCTCTATTACCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020638_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.989 C2=0.348
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=WD(100=30.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGAGACCACACTTGCCT
R:
TGGACTCGAGCTGGTACACTT
Band lengths:
298-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]