BtaEX0017269 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017911 | HMX2
Description
H6 family homeobox 2 [Source:HGNC Symbol;Acc:HGNC:5018]
Coordinates
chr26:43264003-43272421:+
Coord C1 exon
chr26:43264003-43264100
Coord A exon
chr26:43270655-43270923
Coord C2 exon
chr26:43271865-43272421
Length
269 bp
Sequences
Splice sites
3' ss Seq
CCGATTTCTTATGAACCCAGGAT
3' ss Score
3.91
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATTCTGAACCAGGACGTCCTTTGACAGGCCCTGGCACGCCAGAACCCCAGAGCGCGCGCTGGAGGGTAGAGCGGGGAGAAAGAGGAGGAGGCACGCAG
Seq A exon
GATGGGCAGCAAGGAAGATGCGGGCAAGGGGTGTCCGGCGGCCGGCGGCGTCTCCAGCTTCACCATTCAGTCCATCCTGGGCGGGGGCCCCTCGGAGGCGCCGAGGGAGCCGGCCGCCTGGCCGGCCAGGAAGCGCAGCCTGTCCGTGTCCTCGGAGGAGGAGGAGCCGGACGACGGCTGGAAGGCACCCGCCTGCTTCTGCCCAGACCCGCACGGCCCCAAGGAGCCCGGCTCCAAGCACCACCCCCCCATCCCCTTTCCTTGCCTGG
Seq C2 exon
GTACCCCCAAGGGCAGCGGAGGCGCGGGGCCGGCGAGCTCGGAGCGCAAGCCTTTCCTTTCTTCTTCGCACCCGGACTTTAAGGAAGAGAAAGACAGGCTCTTGCCCGCGGGCTCGCCGTCGCCGGGGCCCGAGCGGCCGCGGGACAGCGGCGGCGCCGAGCGGCAGGCGGGCGCGGCCAAGAAGAAGACGCGCACGGTCTTCTCGCGCAGCCAGGTGTACCAGCTCGAATCCACCTTCGACATGAAGCGCTACCTGAGCAGTTCGGAGCGCGCCTGCCTCGCCTCCAGCCTGCAGCTCACCGAGACCCAGGTCAAGACTTGGTTCCAGAACCGCCGCAACAAGTGGAAGCGGCAGCTCTCCGCCGAGCTGGAGGCGGCCAACATGGCGCACGCGTCGGCGCAGACTCTGGTGGGCATGCCGCTGGTGTTCCGGGACAGTTCGCTGCTGCGCGTGCCAGTGCCGCGCTCGCTCGCCTTCCCCGCGCCGCTCTACTACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017911_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.351
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=WD(100=30.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAGCGGGGAGAAAGAGGA
R:
CTCAGGTAGCGCTTCATGTCG
Band lengths:
292-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development