MmuEX1014730 @ mm10
Exon Skipping
Gene
ENSMUSG00000050100 | Hmx2
Description
H6 homeobox 2 [Source:MGI Symbol;Acc:MGI:107159]
Coordinates
chr7:131548773-131558014:+
Coord C1 exon
chr7:131548773-131548886
Coord A exon
chr7:131554306-131554574
Coord C2 exon
chr7:131555427-131558014
Length
269 bp
Sequences
Splice sites
3' ss Seq
CCGATTTCTTATGAACCCAGGAT
3' ss Score
3.91
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTCCCCTCCGTAGGTCAAAGTCAGAGACCACAAGGAGGGAACCCCAGAGCACCCACCTCTCCTTGCCTGGGAAACTAGAAGTGGAGCTGGGGAGAAGGAGAAGGAGGTGGAAAG
Seq A exon
GATGGGCAGCAAGGAAGATGTGGGGAAGGGATGTCCGGCGGCCGGTGGCGTCTCCAGCTTCACCATCCAGTCCATCCTGGGCGGGGGCCCCTCCGAGGCACCGCGGGAGCCCGCCGGGTGGCCAGCCAGGAAACGCAGCCTGTCTGTGTCCTCGGAGGAGGAGGAGCCGGAGGAAGGTTGGAAGGCTCCGGCTTGCTTCTGCCCAGATCCGCACGGCCCCAAGGAGCCAAGCCCTAAGCACCATACCCCCATCCCTTTCCCTTGCCTGG
Seq C2 exon
GTACCCCCAAGGGCAGCGGAGGCGCAGGGCCTGCGGCCTCGGAGCGCACGCCATTCCTTTCTCCTTCTCACCCGGACTTTAAGGAAGAGAAGGAGAGGCTTTTGCCGGCGGGCTCGCCTTCTCCGGGCCCGGAGCGGCCACGGGACGGCGGTGCGGAGCGCCAAACCGGAGCGGCCAAGAAGAAGACGCGCACCGTCTTCTCCCGCAGCCAAGTGTACCAGCTCGAGTCTACCTTCGACATGAAACGCTACCTGAGCAGCTCGGAGCGCGCTTGCCTCGCCTCCAGCCTGCAGCTCACCGAGACCCAGGTTAAGACTTGGTTCCAGAATCGCCGCAACAAGTGGAAGCGGCAGCTCTCAGCCGAGCTTGAGGCAGCCAACATGGCACACGCGTCGGCGCAGACTCTCGTGGGCATGCCGCTCGTGTTTCGGGACAGTTCGCTGCTGCGAGTGCCGGTGCCGCGCTCTCTGGCCTTCCCGGCTCCGCTTTATTACCCGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050100_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.978 C2=0.348
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=WD(100=30.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCTTGCCTGGGAAACT
R:
TCGAAGGTAGACTCGAGCTGG
Band lengths:
297-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types