GgaEX7006608 @ galGal4
Exon Skipping
Gene
ENSGALG00000023414 | HMX2
Description
H6 family homeobox 2 [Source:HGNC Symbol;Acc:HGNC:5018]
Coordinates
chr6:31018104-31023370:+
Coord C1 exon
chr6:31018104-31018179
Coord A exon
chr6:31021291-31021568
Coord C2 exon
chr6:31022464-31023370
Length
278 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTCTTATGAACCCAGGAT
3' ss Score
5.21
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GACGACTTTTGCCTCCCGCGGGCTGCGCAGGGACCGGGCGGGGCGGCGCTCCGCTTCTTCCGAGCACCTCCGGGAG
Seq A exon
GATGAGCAGCAAGGAAGAGCAGAGCAAGTGCTGCCCGCCCGCTGCTCCCGGCTCCACCTTCACCATTCAGTCCATCCTGGGCAGCGGCAGCGCCGACGGCCCCCGGGAACCGGGCCCCAAGGCGGCCCCGTGGCCCCCCCGAGGTCGGAACCTCTCCCTTTCCTCTGACGAAGAGGAACCGAACGAGAGCTGGAAACACCGCGCCTGCTTCTGCCCCGAAGCCCACGGCCCCGCCGAGCCGTGCCGTAAGCAGCAGCCCCTCGGCTTCGCCCGTCTCG
Seq C2 exon
GCAGCACCAAGGGCAGCGGAACGGCTGCGGGCGGAGCGGAGCGGCCCCCCTTCCTCTCGGCTTCCCCGCAGGACTTTAAGGAGGACAAGGAGAAGCCGCTGGGACCCCCCTCGCCCTCCTACGGGGACCGACAGCGCGACAGCGGGGACCGGCAGGCCGGGGCCGCCAAGAAGAAGACGCGCACGGTGTTCAGCCGCAGCCAGGTGTACCAGCTGGAATCCACCTTCGACATGAAACGCTACCTGAGCAGCTCGGAGAGGGCCTGCCTGGCCTCCAGCCTGCAGCTCACCGAGACCCAGGTGAAGACGTGGTTCCAGAACCGCCGCAACAAGTGGAAGCGGCAGCTCTCGGCCGAGCTGGAGGCGGCCAACATGGCCCACGCCTCGGCGCAGACTCTGGTGGGGATGCCGCTGGTGTTCAGAGACAATTCCCTCCTGCGGGTGCCGGTGCCGCGCTCCATCGCCTTCCCCGCTCCTCTCTACTACCCCGGCAGCAACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023414-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.871 C2=0.337
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=WD(100=31.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACTTTTGCCTCCCGC
R:
TGGATTCCAGCTGGTACACCT
Band lengths:
298-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]