RnoEX0042707 @ rn6
Exon Skipping
Gene
ENSRNOG00000015212 | Hspa14
Description
heat shock protein family A, member 14 [Source:RGD Symbol;Acc:1303296]
Coordinates
chr17:78737322-78744901:+
Coord C1 exon
chr17:78737322-78737404
Coord A exon
chr17:78739223-78739950
Coord C2 exon
chr17:78744853-78744901
Length
728 bp
Sequences
Splice sites
3' ss Seq
ATTCCCCTGTGGCCTTCCAGCCA
3' ss Score
8.15
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGGTTGGACTGGCGGCAAAACAAAGTAGGATAAGGAATATCTCAAGCACGGTAGTGAAAGTAAAACAGATCCTTGGCAGAAG
Seq A exon
CCAGAAGTGTGGTCCTCGGACCCGTCTTCTCAGCAGTGAGCCCTGGGAGGGAAGAACCCGCTGGCTCCTAGAAATTTGCTGAGAACACGCAGACCTCCCCCACGCCTTCAAAACTGTGCCCTGCTGCCCAGGAGCCTATTTCAGTAGCCTCCCTTCCCTGCCTGATATGGCCACCGCCAATAGCAGTGCAGGCATCCGTTGGTCCAGACAGGAGACTCGAACTCTTCTCTCCATACTGGGCGAGGCGGAGTATATCCAGCGCCTCCAGACTGTGCATCACAATGCGGACGTTTATCGGGCTGTGTCTAAGCGAATGCAGCAGGAGGGCTTCCGCCGCACCGAACGCCAGTGCCGCTCCAAGTTTAAAGTTCTGAAGGCAATGTATTTAAAGGCCTGTGTGGCCCAGGCCACAAGTCTGGGGGGTCCACCGCACTGCCCGTTTTATGATATATTGGATCAGCTTCTTCGAAATCAGACGGTAACTGACCCAGACAACTTAATGGAGGCCACCGCTTGGGCCAAGCACTGTGATCGGGATTTAGTGGCCTCTGACAAGCCAGGGGATGAGGGAGCCAGCGTTCAGGAAGCGAAAAGGACTCAGGCAGCTTGTCATCGGCGTGTTTTGCAAACAGTGAAGGAGTCGGATGAGGATTGCCAACTGAGGATCAGTGATGGGATGGACGAAGCCAGTGACATTGAGGACTCCTGGGATGAATCCTCAGGTGCAG
Seq C2 exon
CACTGCTGATCCACAGGCTCAGAAATATATCTCGGAAAGTAAATGCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015212_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(33.3=100)
A:
PF0001215=HSP70=PD(11.1=32.1)
C2:
PF0001215=HSP70=FE(3.2=100)
Main Inclusion Isoform:
ENSRNOT00000020854fB6670
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]