RnoEX0046230 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3336024-3336836:+
Coord C1 exon
chr3:3336024-3336103
Coord A exon
chr3:3336312-3336409
Coord C2 exon
chr3:3336737-3336836
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCTCTGTCACTCCAGCCC
3' ss Score
8.02
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGTCCAGGTGGAATTCTATGTCAATGAGAACACCTTCAAAGAACGCCTCAAGCTGTTCTTCATCAAAAACCAGAGATCCA
Seq A exon
CCCCCACCCTAGGGATCCCTACCTCCATCCTTCCCCTCCTTCCCAACCTTAAGCTTGGCCACTCTGGACCCACCTGGGAAGCAAGAAGGGGCTTGGAG
Seq C2 exon
GCCTGAGGATCCGGCTGTTCAACTTCTCCCTCAAGCTCCTCACCTGCCTGCTGTACATTGTCCGTGTCCTGCTCGACAACCCAGACCAGGGCATCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.364 C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000023542fB7224
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGTGGAATTCTATGTCAATGA
R:
CTGGTCTGGGTTGTCGAGCAG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]