RnoEX0046404 @ rn6
Exon Skipping
Gene
ENSRNOG00000019145 | Kdm2a
Description
lysine demethylase 2A [Source:RGD Symbol;Acc:1309419]
Coordinates
chr1:219589112-219592430:-
Coord C1 exon
chr1:219592036-219592430
Coord A exon
chr1:219590499-219590545
Coord C2 exon
chr1:219589112-219589176
Length
47 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTTAAATTGTAGCTG
3' ss Score
8.77
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
ATATGGAATTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGCGGACAAAGAAGCCCGACGCATGAACAGTAAGCGATCTGTGCTTACCAGCCCTGTGGCTAATGGAGTCAACCTGGATTATGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAATCTGAAGAAAACTCTGTCTGGAGACTCATCCTCAGACTCTAGTCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAGAAAGGATAGGCAAGTGCATCTGACCCACTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGGATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG
Seq A exon
CTGGGTGATGGTGATGGCTCACACCTTTCCAGGCCAGCCTGATCAGA
Seq C2 exon
GCAGAGTCTTGCTGGGGAGCCCAGGCTGACCTCAAATTATGAATCTTCCTACTTGAGTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019145-'22-20,'22-19,23-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.692 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000054850fB7261
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGCCACTGCACAAGAAG
R:
CTGGGAGACTCAAGTAGGAAGA
Band lengths:
137-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]