RnoEX0047498 @ rn6
Exon Skipping
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50158534-50160802:+
Coord C1 exon
chr16:50158534-50158696
Coord A exon
chr16:50158738-50159054
Coord C2 exon
chr16:50160696-50160802
Length
317 bp
Sequences
Splice sites
3' ss Seq
ACCAAGGAGACAGATAAAAGGTA
3' ss Score
-16.57
5' ss Seq
GCTGTAATA
5' ss Score
-5.2
Exon sequences
Seq C1 exon
GGTGTCTGTCACAACTGTATGCAAATACCTTCTTCAGAGGTGGGGATCTGGCTGCCATCTACACCCCGGATGCCCAGCACTGTCAGAAGATGTGCACGTTTCACCCCAGGTGCCTGCTCTTCAGCTTCCTTGCCGTGAGTCCAACCAAGGAGACAGATAAAAG
Seq A exon
GTAAGATGTCCGTGAGTCCAATCAAGGAGACAGATAAAAGGTAAGATGTGCTGTTTTATCACTGCCGGGTGAGACGTTTCTCAAATAGCTTCCTGTCGTATGCAAAATTGGTGTCATAGTTCTCAGAGTGTTCACAGACTGATTGCATCAGAAGCTCCTAGGCTGGGTTTTCTCCAATGCAAACTACTAGAGTGCTGAACCCAGAGACGGAGATTCTAAACGACCACGGCATTTGTTCACACAGCATAGGAGGGAGTGATGCTTCAGCCAAGGCCTGAAGACAGAGCGTGTAACAAGAACGGGTCCTTCCTCACGCT
Seq C2 exon
GTTTGGGTGCTTCATGAAAGAGAGCATTACAGGGACTTTGCCAAGAATACACCGGACAGGGGCCATTTCTGGTCATTCTTTAAAACAGTGTGGCCATCAATTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(96.2=90.9)
A:
NO
C2:
PF0002421=PAN_1=PD(34.9=81.1)
Main Inclusion Isoform:
ENSRNOT00000019237fB7447
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTGTCACAACTGTATGCA
R:
CACTTAATTGATGGCCACACTGT
Band lengths:
269-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]