RnoINT0080222 @ rn6
Intron Retention
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50158534-50160802:+
Coord C1 exon
chr16:50158534-50158696
Coord A exon
chr16:50158697-50160695
Coord C2 exon
chr16:50160696-50160802
Length
1999 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTGATTTTTTTTTAAACCAGGTT
3' ss Score
7.1
Exon sequences
Seq C1 exon
GGTGTCTGTCACAACTGTATGCAAATACCTTCTTCAGAGGTGGGGATCTGGCTGCCATCTACACCCCGGATGCCCAGCACTGTCAGAAGATGTGCACGTTTCACCCCAGGTGCCTGCTCTTCAGCTTCCTTGCCGTGAGTCCAACCAAGGAGACAGATAAAAG
Seq A exon
GTAAGATGTCCGTGAGATCCAACCAAGGAGACAGATAAAAGGTAAGATGTCCGTGAGTCCAATCAAGGAGACAGATAAAAGGTAAGATGTGCTGTTTTATCACTGCCGGGTGAGACGTTTCTCAAATAGCTTCCTGTCGTATGCAAAATTGGTGTCATAGTTCTCAGAGTGTTCACAGACTGATTGCATCAGAAGCTCCTAGGCTGGGTTTTCTCCAATGCAAACTACTAGAGTGCTGAACCCAGAGACGGAGATTCTAAACGACCACGGCATTTGTTCACACAGCATAGGAGGGAGTGATGCTTCAGCCAAGGCCTGAAGACAGAGCGTGTAACAAGAACGGGTCCTTCCTCACGCTGTAATACTTAGCTTTCTTCTTCACTTTCAACACGCTATACTGTCCCCACGTGTACACTTGTTATGTGTATAAATATGTTATTAGTCAGGTTCTGCATCTGAGGGAGAACATGAGTTTTTTCCTTTCTGAGATTATGTGGCTTCACTTAATATCACACATTCTAAGTCCATCCATTTTCATACAGTTTTTGTGATTTGATTTTTCTTCAGCACTAAATAGCATTCCTTTATATATTTTCTGTTTTATTCATGATTTATTATGCATTAATTATAATTTACTACAAATGCTACAAATGAAACAATCACACACCCAAATTAACCAGATCCAGAGACTGTACAATTCAGGGACCTTCTATCCAGTTACAGTAGTCATTTGAAAAGGAAGCATGGAACTTCGCAAGGATTCTATACTTTATCAAATATATATATATATATATATATTTTAATCATATATATATATTGCTTGCTGATAGAAGGTGAAAATTTCACCTGCATAAAGAAATATATTTGTTTTACTTGTTACCGTATTTATGGGGAGCAAAGTTGAAGATGTACAAACCAGGAATTTTGTTGATAATAGATTTGAAATCCAGCAGGCAAGCCTCAATGGTATATGTAGTGAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTATGTGCATGCATGTGCATGTATGCATGTGCGTGTATCATTAAGTGGTAATTTTGGCAAGGACAAATATTAGAAATATAGTTCGGAATTTTACCTTAATTTTCTTTCATTTGATCAATAGTCAAATGTAAATTTTTGCCTTCCATTTTCATACACATTACTTTTATCTTCGGTCTATCTGAATTTAAGAATTAGAAATTTGAAACTCATTCTCTGATCTCTACATGCTTACCTGTACAAAACAAAATAAAACAACAAAAACAAAACCAAAACCCAGACTGTATGTGTGATTCACTTTTTTTAAAACTTGAACTAGGTCCTAGGATTCTTATAAAGAGTAAAGTTAACACCGAGCTGATATTGAAGATTGAAAAAACCTCCCCTTATATGGAAACTACCAGATCAATAAACCAGATGAATATCACATACAGACCCAACTTAGCTGATTCAAATTTTTTAAAGTAAATTACAATATTTATAAAAATAATCACCATTTTAGAAAACGTAGAAGTTTCAGACAGGAGAATCATTGGTTTTAAAATCAGCTTGTGTAAGTTAACAAGATCTTTTCTCAAAATAGACTAAATAAAAGCTGGCAGTGGAATGGGAAGAACGAGGCTGTTGAGTGATTAGCACTTGATGAACATATCTGAAGCCCAGGCTTTCCTCCTCAGTCCCACATAAACCAAAACCAAAACCGATTATCTTCTGGAAAGAGGAGCTATGAAATAATCCTCAACTCTGGGATGTGGGTGGCCTTCTGCACTCGAAGCATGAACACTAAGAAAACCAACGATTGTAGATAGTATGAACTTGTCTTAAGAATGTCCTTTCCAGCACATGTCGAGAAATGTAATTAGTTTCCTGACCTTATTTTATTTATTAACATATCCAAAATGCTGTATAATTTCTTAATGTGTATTTGTCGTTTTATTCCCCTTTTAAAATGTGATTTTTTTTTAAACCAG
Seq C2 exon
GTTTGGGTGCTTCATGAAAGAGAGCATTACAGGGACTTTGCCAAGAATACACCGGACAGGGGCCATTTCTGGTCATTCTTTAAAACAGTGTGGCCATCAATTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118:ENSRNOT00000019237:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(96.2=90.9)
A:
NA
C2:
PF0002421=PAN_1=PD(34.9=81.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTGTCACAACTGTATGCA
R:
CACTTAATTGATGGCCACACTGT
Band lengths:
269-2268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]