RnoEX0047544 @ rn6
Exon Skipping
Gene
ENSRNOG00000061739 | Klrk1
Description
killer cell lectin like receptor K1 [Source:RGD Symbol;Acc:3180]
Coordinates
chr4:163396184-163397523:-
Coord C1 exon
chr4:163397431-163397523
Coord A exon
chr4:163396950-163396985
Coord C2 exon
chr4:163396184-163396335
Length
36 bp
Sequences
Splice sites
3' ss Seq
AATTATAATTATTTTGATAGTGT
3' ss Score
3.11
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TATCTCCACTGTTCGTTGTTCGAGTCCTTGTTGCAGCCATGACCATTCGCTTCACCGTTATCACATTGACATGGCTTGCTGTTTTCATAACTT
Seq A exon
TGTTATGCAACAAGGAAGTTTCAGTTTCCTCAAGAG
Seq C2 exon
AGGGCTACTGTGGCCCATGCCCTAACGACTGGATATGTCACAGAAACAACTGTTACCAATTTTTTAATGAGAACAAAGCCTGGAACCAGAGCCAAGCTTCCTGTTTGTCTCAAAATTCCAGCCTGCTGAAGATATACAGTAAAGAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061739-'5-11,'5-9,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(27.6=52.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATTGACATGGCTTGCTGT
R:
GCTCTGGTTCCAGGCTTTGTT
Band lengths:
125-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]