HsaEX0034931 @ hg19
Exon Skipping
Gene
ENSG00000213809 | KLRK1
Description
killer cell lectin-like receptor subfamily K, member 1 [Source:HGNC Symbol;Acc:18788]
Coordinates
chr12:10531153-10532391:-
Coord C1 exon
chr12:10532299-10532391
Coord A exon
chr12:10532046-10532081
Coord C2 exon
chr12:10531153-10531304
Length
36 bp
Sequences
Splice sites
3' ss Seq
ACTTATGGTTATTTTAATAGCAT
3' ss Score
5.15
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
CATCTCCATTTTTTTTCTGCTGCTTCATCGCTGTAGCCATGGGAATCCGTTTCATTATTATGGTAACAATATGGAGTGCTGTATTCCTAAACT
Seq A exon
CATTATTCAACCAAGAAGTTCAAATTCCCTTGACCG
Seq C2 exon
AAAGTTACTGTGGCCCATGTCCTAAAAACTGGATATGTTACAAAAATAACTGCTACCAATTTTTTGATGAGAGTAAAAACTGGTATGAGAGCCAGGCTTCTTGTATGTCTCAAAATGCCAGCCTTCTGAAAGTATACAGCAAAGAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213809-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(27.6=52.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGCTGCTTCATCGCTGT
R:
CCAGTTTTTAGGACATGGGCCA
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)