HsaEX0034931 @ hg38
Exon Skipping
Gene
ENSG00000213809 | KLRK1
Description
killer cell lectin like receptor K1 [Source:HGNC Symbol;Acc:HGNC:18788]
Coordinates
chr12:10378554-10379792:-
Coord C1 exon
chr12:10379700-10379792
Coord A exon
chr12:10379447-10379482
Coord C2 exon
chr12:10378554-10378705
Length
36 bp
Sequences
Splice sites
3' ss Seq
ACTTATGGTTATTTTAATAGCAT
3' ss Score
5.15
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
CATCTCCATTTTTTTTCTGCTGCTTCATCGCTGTAGCCATGGGAATCCGTTTCATTATTATGGTAACAATATGGAGTGCTGTATTCCTAAACT
Seq A exon
CATTATTCAACCAAGAAGTTCAAATTCCCTTGACCG
Seq C2 exon
AAAGTTACTGTGGCCCATGTCCTAAAAACTGGATATGTTACAAAAATAACTGCTACCAATTTTTTGATGAGAGTAAAAACTGGTATGAGAGCCAGGCTTCTTGTATGTCTCAAAATGCCAGCCTTCTGAAAGTATACAGCAAAGAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213809-'4-10,'4-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(27.6=52.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGTAGTCAAAAGCAAATGT
R:
AGCCTGGCTCTCATACCAGTT
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development