HsaINT0088998 @ hg38
Intron Retention
Gene
ENSG00000213809 | KLRK1
Description
killer cell lectin like receptor K1 [Source:HGNC Symbol;Acc:HGNC:18788]
Coordinates
chr12:10378554-10379482:-
Coord C1 exon
chr12:10379447-10379482
Coord A exon
chr12:10378706-10379446
Coord C2 exon
chr12:10378554-10378705
Length
741 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
AATATATTCTCCTTTTCCAGAAA
3' ss Score
9.11
Exon sequences
Seq C1 exon
CATTATTCAACCAAGAAGTTCAAATTCCCTTGACCG
Seq A exon
GTAAGTGAATTTTTAAAATATTTTAGATCATATATTATATGTATCTACCTACATTATTGTGTAGACATGTATTCCATGATTAAAAAAGGAAAAAGTAATTAATTCTAGTCTGTAATACACTATGGCTTCTGTTTTCCTTTTAACAATGAGGGAATACTTGTAAAAAGTAGAGGCTACTTAGGTTTGACATCATCTTTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTGAGATGGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGGGTGATCTCAGCACAATGCAACCTTCGCCTCCCAGTTTCAAGCAATTCTCATGCCTCAGCCTCCCAAGTACCTGGGACTGCAACCTCTACCTCCTAGGTTCAAGCAATTCTCCTGCCTCAGCTTCCAAGTAGCTGGGACTGCAGGCGTGAGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGGCAGGGTTTCACCATGTTGGCCAGGCTGGTATCAAACTTCTAACCTCAAGTGAGTCACCTGCCTTGGCCTCCCAAAGTGCTAGGATTACAGGCATGAGACACCACACCCAGCCTGGCTTCTCTCTATGAATATGTAGAGATATGCCTTTGGTTATGACTGTAATAATTTAATAATCTGAAATTTTAGAGTTGGAGTGAAAAAGGCATTTAATTTGTCTAGACAAAATCTGCTATAATGGTTCAGATGTGTAGAATTAATAATATATTCTCCTTTTCCAG
Seq C2 exon
AAAGTTACTGTGGCCCATGTCCTAAAAACTGGATATGTTACAAAAATAACTGCTACCAATTTTTTGATGAGAGTAAAAACTGGTATGAGAGCCAGGCTTCTTGTATGTCTCAAAATGCCAGCCTTCTGAAAGTATACAGCAAAGAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213809:ENST00000240618:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(27.6=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCAAGAAGTTCAAATTCCCT
R:
CTGGTCCTCTTTGCTGTATACT
Band lengths:
182-923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development