RnoINT0080313 @ rn6
Intron Retention
Gene
ENSRNOG00000061739 | Klrk1
Description
killer cell lectin like receptor K1 [Source:RGD Symbol;Acc:3180]
Coordinates
chr4:163396184-163396985:-
Coord C1 exon
chr4:163396950-163396985
Coord A exon
chr4:163396336-163396949
Coord C2 exon
chr4:163396184-163396335
Length
614 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTATCTAATCTCTTTCTAGAGG
3' ss Score
8.83
Exon sequences
Seq C1 exon
TGTTATGCAACAAGGAAGTTTCAGTTTCCTCAAGAG
Seq A exon
GTAAGTGAATCTTTTTAATATTAAACACAAATTGCAAATAGCTATGTATATCAGGATTTAATATATACTCAAAGGCATTCAAAAGAGAGGCATGGCATAGTTGGATTTTGTGCATAGTTTTCTGTAAATTTTATTGTTTTTAACTGTGAAGGCTGCGAAAGTGTAAATAAATAAAGGATAGTTTTTGTTTCATCTTACATTTTATTTTGTCATATTTGGTTGTTCTCTCTTAGAAGCTTGTTATTTTGTAGTGAAAAACAGAGGAAGCAAATCTGGAGGGAAGGGAAGGTGGGGAGAAACTAGGAGGAGTAAGACGAAGGGAAACTATGATCAGGCTATATTGCATAAGGAAAAAGCTATTTTCAATAAAAAATAGAAAGAGAGAGAGAAAGAAGGGAGATGAGGGAAGGAGGGAGGGAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGTCTTTAGTTTGGGGACCTTTCTTCCTTTATATGTAATTAATCTATTATTTATAATTTTAGAGTTGGAACAGGAAAGGTATTTTTTAATTGCCTAGATGAAATCTGCTTCAATAGTCAAGTGTGCACAGGATTTATCTAATCTCTTTCTAG
Seq C2 exon
AGGGCTACTGTGGCCCATGCCCTAACGACTGGATATGTCACAGAAACAACTGTTACCAATTTTTTAATGAGAACAAAGCCTGGAACCAGAGCCAAGCTTCCTGTTTGTCTCAAAATTCCAGCCTGCTGAAGATATACAGTAAAGAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061739:ENSRNOT00000088151:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(27.6=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTATGCAACAAGGAAGTTTCAGT
R:
TTCTTTACTGTATATCTTCAGCAGGC
Band lengths:
182-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]